Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BK054_RS06085 Genome accession   NZ_CP017769
Coordinates   1344425..1345795 (+) Length   456 a.a.
NCBI ID   WP_006257778.1    Uniprot ID   A0AAC9ISS3
Organism   Myroides sp. ZB35     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1339425..1350795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BK054_RS06065 (BK054_06065) glmS 1339841..1341685 (+) 1845 WP_006266096.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  BK054_RS06070 (BK054_06070) atpD 1341839..1343350 (+) 1512 WP_006257781.1 F0F1 ATP synthase subunit beta -
  BK054_RS06075 (BK054_06075) - 1343377..1343658 (+) 282 WP_006257780.1 F0F1 ATP synthase subunit epsilon -
  BK054_RS06080 (BK054_06080) - 1343720..1344280 (-) 561 WP_071307073.1 hypothetical protein -
  BK054_RS06085 (BK054_06085) radA 1344425..1345795 (+) 1371 WP_006257778.1 DNA repair protein RadA Machinery gene
  BK054_RS06090 (BK054_06090) - 1345812..1347461 (+) 1650 WP_071307074.1 DUF4139 domain-containing protein -
  BK054_RS06095 (BK054_06095) - 1347532..1347816 (-) 285 WP_232234345.1 hypothetical protein -
  BK054_RS18560 - 1347785..1347952 (-) 168 WP_232234346.1 hypothetical protein -
  BK054_RS06100 (BK054_06100) - 1347981..1348412 (-) 432 WP_071307075.1 hypothetical protein -
  BK054_RS06105 (BK054_06105) - 1348559..1349017 (+) 459 WP_071307076.1 DUF421 domain-containing protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50226.73 Da        Isoelectric Point: 6.2746

>NTDB_id=202727 BK054_RS06085 WP_006257778.1 1344425..1345795(+) (radA) [Myroides sp. ZB35]
MAKVKTAFFCQSCGTQYAKWQGQCNACKEWNTLVEEVIQKEEKTAWKAVSSSPNTMKKVAKPLKVREIDSTEEIRMNTMD
GELNRVLGGGLVPGSMVLLGGEPGIGKSTLLLQISLRLPFKTLYVSGEESQKQIKMRAERINPANDNCYILTETNTQNIF
RQIEEIQPDVLIIDSIQTLHTEYIESSAGTVSQIKECTAELTKFAKETGTPVLIIGHITKDGSIAGPKMLEHMVDTVLQF
EGDRNHVYRILRANKNRFGSTAELGIYEMQGSGLREVSNPSEILISHKEEELSGTAIAATLEGMRPLMVEVQALVSTAVY
GTPQRSATGYNLKRLNMILAVLEKRAGFRLGQKDVFLNITGGITVDDPAIDLGVVAAILSSDQDMSIGKDFTFAGEVGLS
GEIRPVNRVDQRIQEAEKLGFSTIFVSKYNKISHTGRGIKVVLVTKIEDVVEYLFG

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=202727 BK054_RS06085 WP_006257778.1 1344425..1345795(+) (radA) [Myroides sp. ZB35]
ATGGCAAAGGTAAAGACGGCTTTTTTCTGTCAGAGTTGTGGTACACAATACGCTAAATGGCAAGGACAATGTAATGCTTG
TAAAGAGTGGAATACACTTGTAGAAGAGGTAATCCAAAAAGAAGAAAAGACAGCGTGGAAAGCAGTAAGTAGTTCTCCTA
ATACCATGAAGAAGGTAGCGAAGCCTCTAAAGGTACGAGAGATAGACAGTACAGAGGAGATACGTATGAATACTATGGAT
GGTGAGCTTAATCGTGTTTTAGGAGGTGGACTGGTACCTGGCTCTATGGTGCTTTTAGGTGGTGAGCCTGGGATAGGAAA
AAGTACATTATTATTACAGATATCTCTGCGTTTGCCTTTCAAGACTCTCTATGTATCAGGAGAGGAAAGTCAGAAACAGA
TAAAGATGAGGGCAGAGCGTATTAACCCTGCTAATGATAACTGTTATATTCTTACGGAGACCAATACACAGAACATCTTT
CGTCAAATAGAGGAGATACAGCCTGATGTATTAATCATTGACTCTATTCAAACTTTGCATACAGAATATATTGAATCTTC
TGCAGGGACTGTTTCTCAGATTAAAGAGTGTACAGCTGAGCTAACTAAATTCGCTAAAGAAACTGGAACTCCAGTATTGA
TTATTGGACATATAACAAAGGATGGAAGTATAGCAGGACCTAAAATGTTAGAACACATGGTGGATACTGTATTACAGTTT
GAAGGTGATAGAAATCACGTATATCGAATACTAAGAGCGAATAAGAACCGTTTTGGTTCTACAGCAGAGCTTGGTATTTA
TGAGATGCAAGGAAGTGGTCTTAGAGAGGTGTCTAATCCTTCTGAAATATTAATATCACATAAAGAAGAAGAATTATCAG
GAACAGCCATCGCTGCTACTTTAGAAGGGATGCGCCCACTGATGGTAGAGGTACAAGCCCTTGTGAGTACAGCTGTATAT
GGTACTCCACAACGTAGTGCAACAGGATATAACCTGAAACGACTGAATATGATCTTAGCTGTATTAGAAAAAAGAGCTGG
ATTTAGATTAGGACAAAAAGACGTATTCTTAAATATCACAGGAGGTATTACAGTAGATGATCCTGCCATTGACTTAGGGG
TGGTTGCTGCTATTCTATCTTCAGATCAAGATATGTCTATTGGCAAAGACTTTACATTCGCTGGAGAGGTAGGGCTATCT
GGTGAGATTAGACCTGTAAATAGAGTAGACCAACGTATACAAGAAGCAGAGAAGCTTGGTTTCTCTACTATTTTTGTTTC
AAAATATAATAAGATTAGTCATACTGGTAGAGGAATTAAGGTTGTTCTAGTGACTAAGATTGAAGATGTAGTAGAATACC
TCTTCGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(82-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Subunit ChlI of Mg-chelatase (ChlI)

(336-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.348

100

0.498
  radA Streptococcus pneumoniae Rx1

49.455

100

0.498
  radA Streptococcus pneumoniae D39

49.455

100

0.498
  radA Streptococcus pneumoniae R6

49.455

100

0.498
  radA Streptococcus pneumoniae TIGR4

49.455

100

0.498
  radA Streptococcus mitis NCTC 12261

49.455

100

0.498
  radA Streptococcus mitis SK321

49.455

100

0.498

Multiple sequence alignment