Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CHQ92_RS08310 Genome accession   NZ_CP022730
Coordinates   1676247..1676723 (+) Length   158 a.a.
NCBI ID   WP_001186774.1    Uniprot ID   -
Organism   Escherichia coli strain SA186     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1671247..1681723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHQ92_RS08290 (CHQ92_08580) - 1671662..1674508 (+) 2847 WP_061157975.1 Ag43/Cah family autotransporter adhesin -
  CHQ92_RS08300 (CHQ92_08590) - 1674836..1675654 (+) 819 WP_061157976.1 DUF932 domain-containing protein -
  CHQ92_RS08305 (CHQ92_08595) - 1675746..1676231 (+) 486 WP_061157977.1 antirestriction protein -
  CHQ92_RS08310 (CHQ92_08600) radC 1676247..1676723 (+) 477 WP_001186774.1 RadC family protein Machinery gene
  CHQ92_RS08315 (CHQ92_08605) - 1676810..1677031 (+) 222 WP_000692350.1 DUF987 domain-containing protein -
  CHQ92_RS08320 (CHQ92_08610) - 1677111..1677479 (+) 369 WP_001285610.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CHQ92_RS08325 (CHQ92_08615) cbtA 1677569..1677946 (+) 378 WP_061157978.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  CHQ92_RS08330 - 1677943..1678140 (+) 198 Protein_1596 DUF5983 family protein -
  CHQ92_RS08335 (CHQ92_08620) - 1678168..1678365 (+) 198 WP_085949090.1 DUF957 domain-containing protein -
  CHQ92_RS08340 (CHQ92_08625) - 1678450..1679292 (+) 843 WP_001280493.1 DUF4942 domain-containing protein -
  CHQ92_RS08345 (CHQ92_08630) - 1679634..1679804 (+) 171 Protein_1599 IS110 family transposase -
  CHQ92_RS08350 (CHQ92_08635) - 1680615..1681598 (+) 984 WP_061157979.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.27 Da        Isoelectric Point: 7.2020

>NTDB_id=202707 CHQ92_RS08310 WP_001186774.1 1676247..1676723(+) (radC) [Escherichia coli strain SA186]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=202707 CHQ92_RS08310 WP_001186774.1 1676247..1676723(+) (radC) [Escherichia coli strain SA186]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACTGGCACC
ATCAACCGCACAGAAGTCCATCCCCGGGAGGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment