Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   BKP58_RS15495 Genome accession   NZ_CP017763
Coordinates   2886170..2886892 (+) Length   240 a.a.
NCBI ID   WP_014481051.1    Uniprot ID   -
Organism   Bacillus subtilis strain 29R7-12     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2881170..2891892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKP58_RS15470 (BKP58_15440) degS 2881480..2882637 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  BKP58_RS15475 (BKP58_15445) degU 2882720..2883409 (+) 690 WP_014481054.1 two-component system response regulator DegU Regulator
  BKP58_RS15480 (BKP58_15450) fakBA 2883507..2884352 (+) 846 WP_014481053.1 DegV family protein -
  BKP58_RS15485 (BKP58_15455) comFA 2884459..2885850 (+) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  BKP58_RS15490 (BKP58_15460) comFB 2885910..2886206 (+) 297 WP_003227989.1 late competence protein ComFB -
  BKP58_RS15495 (BKP58_15465) comFC 2886170..2886892 (+) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  BKP58_RS15500 (BKP58_15470) yvyF 2886965..2887384 (+) 420 WP_014481050.1 TIGR03826 family flagellar region protein -
  BKP58_RS15505 (BKP58_15475) flgM 2887465..2887731 (+) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  BKP58_RS15510 (BKP58_15480) flgN 2887747..2888229 (+) 483 WP_014481048.1 flagellar protein FlgN -
  BKP58_RS15515 (BKP58_15485) flgK 2888248..2889771 (+) 1524 WP_014481047.1 flagellar hook-associated protein FlgK -
  BKP58_RS15520 (BKP58_15490) flgL 2889782..2890678 (+) 897 WP_014481046.1 flagellar hook-associated protein FlgL -
  BKP58_RS15525 (BKP58_15495) yviE 2890725..2891300 (+) 576 WP_014481045.1 DUF6470 family protein -
  BKP58_RS15530 (BKP58_15500) fliW 2891321..2891752 (+) 432 WP_003228007.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27521.79 Da        Isoelectric Point: 9.3154

>NTDB_id=202684 BKP58_RS15495 WP_014481051.1 2886170..2886892(+) (comFC) [Bacillus subtilis strain 29R7-12]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=202684 BKP58_RS15495 WP_014481051.1 2886170..2886892(+) (comFC) [Bacillus subtilis strain 29R7-12]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

99.167

100

0.992

Multiple sequence alignment