Detailed information    

insolico Bioinformatically predicted

Overview


Name   nin/comJ   Type   Regulator
Locus tag   BKP58_RS10345 Genome accession   NZ_CP017763
Coordinates   1916465..1916863 (+) Length   132 a.a.
NCBI ID   WP_014478800.1    Uniprot ID   A0A0D1L5A4
Organism   Bacillus subtilis strain 29R7-12     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context


Location: 1911465..1921863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKP58_RS10320 (BKP58_10325) hxlR 1912203..1912565 (-) 363 WP_003246265.1 transcriptional activator HxlR -
  BKP58_RS10325 (BKP58_10330) hxlA 1912794..1913426 (+) 633 WP_014478804.1 3-hexulose-6-phosphate synthase -
  BKP58_RS10330 (BKP58_10335) hxlB 1913432..1913989 (+) 558 WP_014478803.1 6-phospho-3-hexuloisomerase -
  BKP58_RS10335 (BKP58_10340) tlpC 1914100..1915821 (+) 1722 Protein_2025 methyl-accepting chemotaxis protein TlpC -
  BKP58_RS10340 (BKP58_10345) nucA/comI 1915989..1916438 (+) 450 WP_014475770.1 DNA-entry nuclease Machinery gene
  BKP58_RS10345 (BKP58_10350) nin/comJ 1916465..1916863 (+) 399 WP_014478800.1 DNA-entry nuclease inhibitor Regulator
  BKP58_RS10350 (BKP58_10355) bglC 1916900..1918333 (-) 1434 WP_014478799.1 6-phospho-beta-glucosidase -
  BKP58_RS10355 (BKP58_10360) - 1918406..1919150 (-) 745 Protein_2029 AAA family ATPase -
  BKP58_RS10360 (BKP58_10365) - 1919169..1919489 (-) 321 WP_014478796.1 DUF3147 family protein -
  BKP58_RS10365 (BKP58_10370) - 1919477..1919899 (-) 423 WP_014478795.1 MarR family winged helix-turn-helix transcriptional regulator -
  BKP58_RS10370 (BKP58_10375) yckD 1920027..1920359 (-) 333 WP_014478794.1 YckD family protein -
  BKP58_RS10375 (BKP58_10380) yckC 1920441..1920896 (-) 456 WP_014478793.1 RDD family protein -
  BKP58_RS22690 - 1920916..1921113 (-) 198 WP_121509395.1 hypothetical protein -

Sequence


Protein


Download         Length: 132 a.a.        Molecular weight: 15006.98 Da        Isoelectric Point: 4.8991

>NTDB_id=202666 BKP58_RS10345 WP_014478800.1 1916465..1916863(+) (nin/comJ) [Bacillus subtilis strain 29R7-12]
MIKSWKPQELSISYHQFTVFQKDSTPPIMDWTDEAIEKGYTAADGAISFEAQRNTKAFILLRLNSSETVNSYEKKVTVPF
HVTENGIHIESIMSKRLSFDLPKGDYQLTCWTVPAEMSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=202666 BKP58_RS10345 WP_014478800.1 1916465..1916863(+) (nin/comJ) [Bacillus subtilis strain 29R7-12]
TTGATCAAATCATGGAAGCCGCAAGAACTTTCGATTTCATATCATCAATTTACTGTATTTCAAAAGGATTCTACACCTCC
TATAATGGATTGGACTGACGAAGCGATTGAAAAAGGATATACTGCGGCAGACGGAGCCATTTCATTTGAGGCACAGCGAA
ATACAAAGGCCTTTATTCTTTTGCGCCTGAACAGTTCAGAAACAGTAAACTCCTACGAAAAAAAAGTGACTGTTCCTTTT
CATGTCACAGAAAACGGAATTCATATTGAAAGCATTATGTCTAAGAGACTGTCCTTTGATCTGCCTAAAGGAGACTATCA
ATTGACATGCTGGACTGTGCCGGCTGAAATGTCAGATTTGCACGCCGACACTTATATTATTGATGCTGTTTCTGTGTAA

Domains


Predicted by InterproScan.

(9-129)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0D1L5A4

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

97.727

100

0.977


Multiple sequence alignment