Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   BKP58_RS06470 Genome accession   NZ_CP017763
Coordinates   1165839..1166417 (-) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain 29R7-12     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1160839..1171417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKP58_RS06435 (BKP58_06480) lepB 1160846..1161352 (-) 507 WP_003233128.1 signal peptidase I -
  BKP58_RS06440 (BKP58_06485) yhjE 1161354..1161977 (-) 624 WP_014479375.1 TVP38/TMEM64 family protein -
  BKP58_RS06445 (BKP58_06490) - 1162129..1162500 (+) 372 WP_014476361.1 hypothetical protein -
  BKP58_RS06450 (BKP58_06495) yhjC 1162699..1162899 (+) 201 WP_003224377.1 DUF3311 domain-containing protein -
  BKP58_RS06455 (BKP58_06500) yhjB 1162896..1164365 (+) 1470 WP_014479374.1 sodium:solute symporter family protein -
  BKP58_RS06460 (BKP58_06505) yhjA 1164409..1164678 (-) 270 WP_014479373.1 excalibur calcium-binding domain-containing protein -
  BKP58_RS06465 (BKP58_06510) yhxD 1164895..1165794 (+) 900 WP_014479372.1 SDR family oxidoreductase -
  BKP58_RS06470 (BKP58_06515) comK 1165839..1166417 (-) 579 WP_003245329.1 competence transcription factor ComK Regulator
  BKP58_RS06475 (BKP58_06520) yhzC 1166710..1166943 (+) 234 WP_003233142.1 IDEAL domain-containing protein -
  BKP58_RS06480 (BKP58_06525) yhxC 1166971..1167828 (-) 858 WP_014479371.1 SDR family oxidoreductase -
  BKP58_RS06485 (BKP58_06530) comW 1167932..1169460 (+) 1529 Protein_1292 FAD-dependent oxidoreductase -
  BKP58_RS23605 hemAT 1169716..1170093 (+) 378 Protein_1293 heme-based aerotactic transducer HemAT -
  BKP58_RS23610 - 1170100..1170897 (+) 798 WP_396125290.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=202656 BKP58_RS06470 WP_003245329.1 1165839..1166417(-) (comK) [Bacillus subtilis strain 29R7-12]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=202656 BKP58_RS06470 WP_003245329.1 1165839..1166417(-) (comK) [Bacillus subtilis strain 29R7-12]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAATCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAGTTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment