Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   Spy49_0943c Genome accession   CP000829
Coordinates   935045..936115 (-) Length   356 a.a.
NCBI ID   ACI61245.1    Uniprot ID   -
Organism   Streptococcus pyogenes NZ131     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 930045..941115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Spy49_0938 citX 930535..931209 (+) 675 ACI61241.1 Probable apo-citrate lyase phosphoribosyl- dephospho-CoA transferase -
  Spy49_0939 oadA 931224..932618 (+) 1395 ACI61242.1 Oxaloacetate decarboxylase alpha chain -
  Spy49_0940c citC 932729..933781 (-) 1053 ACI61243.1 Citrate (pro-3S)-lyase ligase -
  Spy49_0942c - 933968..934351 (-) 384 ACI61244.1 hypothetical protein -
  Spy49_0943c xerS 935045..936115 (-) 1071 ACI61245.1 Tyrosine recombinase xerC Machinery gene
  Spy49_0944 - 936585..937283 (+) 699 ACI61246.1 Putative repressor protein -
  Spy49_0945c ffh 937400..938962 (-) 1563 ACI61247.1 Signal recognition particle, subunit Ffh SRP54 -
  Spy49_0946c - 938977..939318 (-) 342 ACI61248.1 putative DNA-binding protein -
  Spy49_0947c - 939407..940105 (-) 699 ACI61249.1 Transcriptional regulator, GntR family -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41540.63 Da        Isoelectric Point: 9.5591

>NTDB_id=20264 Spy49_0943c ACI61245.1 935045..936115(-) (xerS) [Streptococcus pyogenes NZ131]
MRRELLLEKIETYKAIMPWYVLDYYQSQLAVPYRFTTLYEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLE
AFVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDS
VNVAGFAKGYLESYLAVRQRRYKAEKQDLAFFLTEYRGVPNRMDASSIEKMVGKYSEDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=20264 Spy49_0943c ACI61245.1 935045..936115(-) (xerS) [Streptococcus pyogenes NZ131]
ATGAGACGCGAATTATTACTAGAAAAAATTGAAACCTATAAGGCCATCATGCCTTGGTATGTTTTAGATTATTACCAATC
CCAGTTAGCTGTTCCATACCGCTTTACCACTTTATATGAGTATTTAAAAGAATACAAACGCTTTTTTGATTGGCTGATGG
ATGCTGATTTAACGCAGGCGCCAAAGATTGCTGATATTGACTTGAGCACGCTTGAGCACCTTACCAAGAAGGATTTAGAG
GCCTTTGTGCTTTATTTGCGGGAACGACCTTCTCTCAACACCTATTCCACCAAAGAGGGGCTTTCTCAAACCACTATTAA
TCGGACCTTGTCTGCCCTATCAAGCCTTTACAAGTACTTGACTGAAGAGGTTGAAAATGACCAAGGGGAGCCTTATTTTT
ATCGGAATGTTATGAAAAAAGTGTCAACAAAAAAGAAAAAAGAAACCCTGGCTTCCAGAGCGGAAAATATTAAGCAGAAA
CTGTTTTTAGGTGATGAAACTCTAGCTTTCTTGGATTATGTGGATAAGGAATATGAGCAAAAATTGTCTAATCGTGCCAA
ATCTTCTTTCCGTAAAAATAAGGAGAGGGATTTGGCTATTATTGCTCTACTACTTGCTTCTGGTGTTCGTTTGTCTGAAG
CAGTGAATCTTGATTTAAAAGATGTCAATCTAAATATGATGATTATCGAAGTTATTCGCAAAGGCGGAAAACGTGATTCA
GTCAATGTAGCAGGTTTTGCGAAAGGTTATTTGGAGTCTTATTTAGCTGTTCGTCAGAGACGTTACAAGGCTGAAAAACA
GGATCTTGCTTTCTTTTTAACAGAATACCGTGGCGTTCCAAATCGAATGGATGCTTCTAGTATAGAAAAGATGGTTGGCA
AGTACTCTGAGGATTTTAAAATTCGTGTGACTCCTCACAAATTGCGTCATACGCTAGCGACAAGACTATATGATGCTACT
AAATCTCAGGTGTTAGTTAGTCATCAATTAGGCCATTCCTCTACTCAAGTCACGGATCTTTATACCCATATTGTCAATGA
TGAGCAAAAAAATGCTTTAGATAACCTTTAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(177-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

80.056

100

0.801