Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   BKP58_RS00840 Genome accession   NZ_CP017763
Coordinates   139861..140481 (-) Length   206 a.a.
NCBI ID   WP_014480105.1    Uniprot ID   A0A0D1KQW4
Organism   Bacillus subtilis strain 29R7-12     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 134861..145481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKP58_RS00820 (BKP58_00815) dnaD 135152..135850 (+) 699 WP_004398499.1 DNA replication protein DnaD -
  BKP58_RS00825 (BKP58_00820) nth 135869..136528 (+) 660 WP_009967580.1 endonuclease III -
  BKP58_RS00830 (BKP58_00825) ypoC 136525..137019 (+) 495 WP_009967579.1 YpoC family protein -
  BKP58_RS00835 (BKP58_00830) ponA 137095..139839 (-) 2745 WP_004398589.1 transglycosylase domain-containing protein -
  BKP58_RS00840 (BKP58_00835) recU 139861..140481 (-) 621 WP_014480105.1 Holliday junction resolvase RecU Machinery gene
  BKP58_RS00845 (BKP58_00840) yppC 140522..141484 (+) 963 WP_033881326.1 DUF2515 domain-containing protein -
  BKP58_RS00850 (BKP58_00845) sspM 141509..141613 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  BKP58_RS00855 (BKP58_00850) yppD 141812..142057 (+) 246 WP_004398488.1 YppD family protein -
  BKP58_RS00860 (BKP58_00855) yppE 142103..142474 (+) 372 WP_003246080.1 YppE family protein -
  BKP58_RS00865 (BKP58_00860) yppF 142513..142701 (-) 189 WP_003230690.1 YppF family protein -
  BKP58_RS00870 (BKP58_00865) sppG 142888..143265 (+) 378 WP_004398696.1 YppG family protein -
  BKP58_RS00875 (BKP58_00870) ypqA 143286..143705 (-) 420 WP_014480103.1 Hsp20/alpha crystallin family protein -
  BKP58_RS00880 (BKP58_00875) ptsA 143843..144349 (+) 507 WP_029726788.1 PTS sugar transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 24019.18 Da        Isoelectric Point: 9.6240

>NTDB_id=202637 BKP58_RS00840 WP_014480105.1 139861..140481(-) (recU) [Bacillus subtilis strain 29R7-12]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPIFLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=202637 BKP58_RS00840 WP_014480105.1 139861..140481(-) (recU) [Bacillus subtilis strain 29R7-12]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTATATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTTTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KQW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.515

100

0.995

Multiple sequence alignment