Detailed information NTG0202627

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: BKP57_RS11425
• Genome accession: NZ_CP017762
• Coordinates: 2533364..2534737 (+)
• Length: 457 a.a.
• NCBI ID: WP_072741554.1
• Uniprot ID: -
• Organism: Virgibacillus sp. 6R
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2528364..2539737

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BKP57_RS11410 (BKP57_11225)	-	2528753..2529301 (+)	549	WP_050349661.1	UvrB/UvrC motif-containing protein	-
BKP57_RS11415 (BKP57_11230)	-	2529298..2530362 (+)	1065	WP_050349660.1	protein arginine kinase	-
BKP57_RS11420 (BKP57_11235)	clpC	2530381..2532807 (+)	2427	WP_050349659.1	ATP-dependent protease ATP-binding subunit ClpC	-
BKP57_RS11425 (BKP57_11240)	radA	2533364..2534737 (+)	1374	WP_072741554.1	DNA repair protein RadA	Machinery gene
BKP57_RS11430 (BKP57_11245)	-	2535176..2536276 (+)	1101	WP_050349676.1	PIN/TRAM domain-containing protein	-
BKP57_RS11435 (BKP57_11250)	gltX	2537102..2538571 (+)	1470	WP_050349657.1	glutamate--tRNA ligase	-

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 49951.44 Da
• Isoelectric Point: 8.2277

>NTDB_id=202627 BKP57_RS11425 WP_072741554.1 2533364..2534737(+) (radA) [Virgibacillus sp. 6R]
MAKRKTKFVCQECGYEAAKWLGKCPGCNNWNTFVEEIEVTGGRQKQAFHTGNRSVGKPEKITAIKSQQEPRITTSMKEFN
RVLGGGIVPGSLVLIGGDPGIGKSTLLLQISSQLADKSLSVLYISGEESTRQTKLRADRLGVTSDSLYVLAETNLLDIAN
QIETIKPSFVVIDSIQTIYREEITSAPGSVSQVRECTSELMKLAKTNGIPIFIVGHVTKEGSIAGPRLLEHMVDAVLYFE
GERHHTYRILRGVKNRFGSTNEMGIFEMKEEGLREVLNPSEIFLEERSQGASGSTVVASMEGTRPVLVEIQALISPTAFG
NPRRMATGVDQNRVPLLMAVLEKRVGLMLQNQDAYIKVAGGVKLDEPAIDLAIAVSIASSFRDQPTKPEDIFIGEVGLTG
EIRRVSRIEQRVQEAAKLGFKRVICPKNNLGGWTAPNNIEIIGVSSVQEALQIGVSR

Nucleotide

• Length: 1374 bp

>NTDB_id=202627 BKP57_RS11425 WP_072741554.1 2533364..2534737(+) (radA) [Virgibacillus sp. 6R]
TTGGCAAAACGAAAAACGAAATTTGTTTGTCAGGAATGTGGCTATGAAGCAGCAAAATGGCTCGGGAAATGTCCCGGTTG
CAATAATTGGAATACATTTGTAGAAGAAATAGAAGTCACTGGTGGCAGACAAAAACAAGCTTTTCATACTGGGAATAGAT
CAGTTGGAAAGCCTGAAAAAATAACCGCAATTAAATCACAGCAAGAACCGAGGATAACAACAAGTATGAAAGAGTTTAAT
CGTGTGCTTGGTGGCGGTATTGTACCAGGATCCCTTGTGTTAATCGGTGGAGATCCCGGAATTGGTAAATCTACTTTATT
ATTGCAAATATCATCACAATTGGCAGATAAAAGCTTATCCGTACTATATATTTCTGGAGAAGAATCAACGAGACAAACGA
AGCTGCGGGCTGATCGCTTAGGTGTTACCTCCGATTCATTATATGTATTAGCTGAAACGAATTTATTGGATATAGCAAAT
CAAATTGAAACAATAAAGCCATCCTTTGTCGTTATTGATTCGATTCAAACCATCTATCGTGAAGAAATCACAAGTGCTCC
GGGAAGTGTTTCCCAAGTAAGAGAATGTACCTCCGAATTGATGAAACTAGCAAAAACAAACGGTATACCGATATTTATAG
TGGGACATGTGACGAAAGAGGGTTCAATTGCAGGACCAAGACTTTTGGAGCATATGGTTGATGCTGTACTTTATTTTGAA
GGGGAACGTCATCATACGTACCGAATATTACGGGGCGTGAAGAATCGATTTGGCAGTACGAACGAAATGGGTATTTTTGA
AATGAAAGAGGAAGGGTTGCGCGAGGTTTTAAATCCTTCTGAAATATTTTTGGAAGAGCGCTCACAAGGGGCCTCCGGGT
CTACTGTTGTAGCTTCCATGGAAGGCACAAGACCAGTACTGGTTGAGATACAAGCATTAATTTCCCCTACTGCATTCGGG
AATCCGCGTAGAATGGCGACGGGAGTAGATCAGAATCGCGTTCCGCTTCTAATGGCCGTGTTGGAAAAGCGGGTCGGGTT
AATGCTACAAAATCAGGATGCATATATAAAAGTGGCTGGCGGAGTTAAGCTAGATGAACCTGCCATTGACTTAGCGATTG
CTGTTAGTATCGCTTCAAGCTTCCGTGACCAACCTACAAAACCGGAAGATATTTTTATTGGGGAAGTCGGTTTGACTGGT
GAAATAAGGCGTGTTTCTCGAATTGAACAGCGCGTTCAAGAGGCTGCAAAGCTAGGATTTAAACGAGTAATTTGTCCTAA
AAATAATTTAGGTGGATGGACAGCTCCAAATAACATTGAAATTATTGGTGTGAGTTCCGTACAGGAAGCGTTACAAATCG
GGGTAAGTAGATAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (68-221)

• Subunit ChlI of Mg-chelatase (ChlI) (355-429)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	74.834	99.125	0.742
radA	Streptococcus mitis NCTC 12261	64.159	98.906	0.635
radA	Streptococcus pneumoniae Rx1	64.159	98.906	0.635
radA	Streptococcus pneumoniae D39	64.159	98.906	0.635
radA	Streptococcus pneumoniae R6	64.159	98.906	0.635
radA	Streptococcus pneumoniae TIGR4	64.159	98.906	0.635
radA	Streptococcus mitis SK321	64.159	98.906	0.635