Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BKP56_RS12220 Genome accession   NZ_CP017761
Coordinates   2491995..2493704 (-) Length   569 a.a.
NCBI ID   WP_072695410.1    Uniprot ID   -
Organism   Marinilactibacillus sp. 15R     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2486995..2498704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKP56_RS12205 (BKP56_12070) - 2487551..2489101 (-) 1551 WP_072695404.1 HAMP domain-containing histidine kinase -
  BKP56_RS12210 (BKP56_12075) - 2489098..2489790 (-) 693 WP_072695406.1 response regulator transcription factor -
  BKP56_RS12215 (BKP56_12080) gndA 2490093..2491532 (-) 1440 WP_072695408.1 NADP-dependent phosphogluconate dehydrogenase -
  BKP56_RS12220 (BKP56_12085) recN 2491995..2493704 (-) 1710 WP_072695410.1 DNA repair protein RecN Machinery gene
  BKP56_RS12225 (BKP56_12090) argR 2493749..2494198 (-) 450 WP_072695412.1 arginine repressor -
  BKP56_RS12230 (BKP56_12095) - 2494421..2495236 (-) 816 WP_083540572.1 TlyA family RNA methyltransferase -
  BKP56_RS12235 (BKP56_12100) - 2495281..2496171 (-) 891 WP_072695417.1 polyprenyl synthetase family protein -
  BKP56_RS12240 (BKP56_12105) - 2496182..2496418 (-) 237 WP_072695419.1 exodeoxyribonuclease VII small subunit -
  BKP56_RS12245 (BKP56_12110) xseA 2496447..2497784 (-) 1338 WP_072695421.1 exodeoxyribonuclease VII large subunit -
  BKP56_RS12250 (BKP56_12115) nusB 2497992..2498474 (-) 483 WP_072695423.1 transcription antitermination factor NusB -

Sequence

Protein


Download         Length: 569 a.a.        Molecular weight: 64481.41 Da        Isoelectric Point: 4.7531

>NTDB_id=202596 BKP56_RS12220 WP_072695410.1 2491995..2493704(-) (recN) [Marinilactibacillus sp. 15R]
MLQALHIQNFAIIQELSLDFSQGMTVLTGETGAGKSIIIDAVGLLAGGRGSTEFVRYGTKKCLLEGHFSLNENQEVMKLL
DEHAIDSDDEVIMIQREIFATGRNVCRINGTIVTIAVLKEIGTALIDIHGQNEHQELMVPESHIELLDQYGDKKLANAKK
RYKELYKEYKAVKKEQNEWQYNEQELAQRLDILKFQVDEIGEAQLEDHEEETLKEEEQKLSNHQSIVEALSSSYNALQGE
EISGLDLVGQAMDSLSSIEGMDDKFKQISDTVSAAFFQIQEASSDIYNEMDNLEYDEERLNDIETRLNLIQQLKRKYGQS
IEEIKAFYDKAVAELEKIENREGQMDHLNKKIKDLEAKLLKEAYELSKYRRQAAKRLEKAIHEQLKELFMDKVVFSVNFS
KEMKEFIIRDAHENGMDKVEFYVVTNPGEPLKPLVKVASGGELSRMMLAMKTIFSKEQGMTSIIFDEVDTGVSGRVAQAI
ADKIYSVAQYSQVLCITHLPQVAAMADQHLYISKVIVDERTSTHVEKLSEGSKVEEVARMLAGSEITKLTIDTAKELLIL
ASKKKADKY

Nucleotide


Download         Length: 1710 bp        

>NTDB_id=202596 BKP56_RS12220 WP_072695410.1 2491995..2493704(-) (recN) [Marinilactibacillus sp. 15R]
TTGCTGCAAGCATTGCATATTCAGAATTTTGCTATTATTCAAGAATTATCATTAGACTTCAGCCAGGGAATGACCGTATT
GACTGGCGAAACCGGTGCAGGTAAATCAATTATAATTGATGCAGTCGGATTGCTTGCCGGCGGAAGAGGTTCTACAGAAT
TTGTAAGATATGGTACAAAAAAATGTTTATTAGAAGGTCACTTCTCTTTAAATGAAAATCAGGAAGTTATGAAGTTGCTG
GATGAACATGCGATCGATTCAGATGATGAAGTCATCATGATCCAGAGGGAAATTTTTGCTACAGGTAGAAATGTGTGCCG
AATTAATGGAACCATTGTAACCATCGCTGTTCTGAAAGAAATTGGAACCGCATTGATTGATATACATGGTCAGAATGAGC
ATCAGGAACTGATGGTACCGGAAAGCCATATTGAATTGCTTGATCAATACGGCGATAAAAAATTGGCAAATGCAAAGAAA
CGTTATAAAGAACTTTACAAAGAATATAAAGCTGTAAAAAAAGAACAAAATGAATGGCAGTATAATGAACAAGAATTGGC
TCAGAGACTTGATATATTAAAGTTTCAAGTAGATGAAATAGGGGAAGCACAGCTTGAGGATCATGAGGAAGAAACCTTAA
AAGAAGAAGAGCAAAAGCTTTCAAATCATCAATCAATAGTTGAAGCTCTTTCATCTAGTTACAATGCACTCCAAGGAGAA
GAAATTAGTGGGTTGGATCTCGTTGGACAGGCAATGGATAGTTTGTCTTCGATAGAAGGAATGGATGATAAATTTAAACA
AATCTCTGATACAGTTTCGGCTGCCTTTTTTCAGATTCAAGAAGCTTCAAGTGATATTTATAATGAAATGGATAATTTGG
AATACGACGAAGAACGCTTAAATGATATTGAGACAAGGTTGAATCTTATTCAGCAACTCAAACGGAAATACGGACAGTCG
ATTGAAGAAATCAAAGCCTTCTATGACAAAGCGGTAGCCGAACTAGAAAAAATAGAAAACCGCGAAGGCCAGATGGATCA
TTTAAATAAGAAGATAAAAGATTTAGAAGCTAAATTGTTGAAAGAGGCTTACGAGTTATCTAAATACAGAAGACAAGCAG
CAAAAAGATTAGAAAAAGCTATACATGAGCAATTAAAAGAATTATTTATGGATAAAGTTGTTTTTTCAGTAAATTTCAGT
AAAGAAATGAAAGAATTTATAATCAGAGATGCTCATGAAAATGGTATGGATAAAGTAGAATTCTATGTAGTGACTAACCC
GGGAGAACCTTTAAAACCTTTGGTAAAAGTTGCCTCTGGTGGAGAATTATCGAGAATGATGCTAGCAATGAAAACAATTT
TCTCTAAAGAGCAGGGAATGACAAGTATTATTTTTGACGAAGTGGATACGGGTGTAAGTGGTAGAGTTGCTCAGGCAATA
GCAGATAAAATATATTCTGTAGCACAATATTCTCAAGTATTATGTATTACTCATTTGCCCCAAGTAGCTGCGATGGCAGA
TCAGCATCTTTACATCAGTAAAGTAATAGTGGACGAAAGAACTAGTACACACGTTGAAAAACTAAGTGAGGGCAGTAAAG
TTGAAGAAGTGGCTCGTATGCTTGCGGGAAGCGAGATTACAAAGTTAACGATTGACACTGCTAAGGAGCTTTTAATATTA
GCTTCTAAGAAAAAAGCAGATAAATACTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

49.829

100

0.511

Multiple sequence alignment