Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   BKP56_RS07630 Genome accession   NZ_CP017761
Coordinates   1539550..1541367 (+) Length   605 a.a.
NCBI ID   WP_072694511.1    Uniprot ID   A0A1L4BZ46
Organism   Marinilactibacillus sp. 15R     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1534550..1546367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKP56_RS07600 (BKP56_07530) - 1534689..1535432 (+) 744 WP_072694505.1 MBL fold metallo-hydrolase -
  BKP56_RS07605 (BKP56_07535) - 1535447..1536466 (+) 1020 WP_072694506.1 lipoate--protein ligase -
  BKP56_RS07610 (BKP56_07540) spxA 1536863..1537270 (+) 408 WP_072694507.1 transcriptional regulator SpxA -
  BKP56_RS07615 (BKP56_07545) - 1537561..1538220 (+) 660 WP_072694508.1 adaptor protein MecA -
  BKP56_RS07625 (BKP56_07555) - 1538316..1539505 (+) 1190 Protein_1457 competence protein CoiA family protein -
  BKP56_RS07630 (BKP56_07560) pepF 1539550..1541367 (+) 1818 WP_072694511.1 oligoendopeptidase F Regulator
  BKP56_RS07635 (BKP56_07565) - 1541417..1542046 (-) 630 WP_072694512.1 DsbA family protein -
  BKP56_RS07640 (BKP56_07570) - 1542265..1542861 (-) 597 WP_072694513.1 CYTH domain-containing protein -
  BKP56_RS07645 (BKP56_07575) - 1542963..1543616 (+) 654 WP_072694514.1 GTP pyrophosphokinase family protein -
  BKP56_RS07650 (BKP56_07580) - 1543621..1544433 (+) 813 WP_072696076.1 NAD kinase -
  BKP56_RS07655 (BKP56_07585) - 1544396..1545316 (+) 921 WP_232226861.1 RluA family pseudouridine synthase -
  BKP56_RS07660 (BKP56_07590) - 1545317..1546315 (+) 999 WP_072694516.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69468.59 Da        Isoelectric Point: 4.8682

>NTDB_id=202586 BKP56_RS07630 WP_072694511.1 1539550..1541367(+) (pepF) [Marinilactibacillus sp. 15R]
MSEVKSLPKREEVSKELTWDLTVIFKSDEEWENAIKEAEEKVRNVSSLQGTLANGAEDFLKALESILDVFRSFGSVYVYS
HLKNDQDTSNGTYQAMNDRARLLATKAGEATSWFEPELLSLSEDKLKGYFEEKEELTVYKHYIDQLTANREHVLSAEMEA
LLAGANDILTASSQTFSVLNNADLTFPKVKGEHGEEVQLSHGMYGQLLESTNREVRSEAFRKMYEIYEGLKNTFASTLSA
NVKNHNYQASVHKFNSARERALSANHIPESVHETLIDVVNEHLPLLHRYMELRKKLLNVNELHMYDLYTPITGEASLKYT
YEEAKQETLKGLAPLGSEYKKVLETAFNDRWIDVVENKGKRSGAYSSGDYDTNPYILLNWHDSLNHLYTLVHELGHSAHS
YFTRGNQPFVYGDYSIFLAEIASTTNENILTDYLLKTTEDPKARAYVLNHYLDGFKGTVFRQTQFAEFEHFMHEEAAKGI
PLTADYLNKNYAEINSKYYGEAVEKDSEIQYEWARIPHFYYNYYVYQYSTGFCAATALADNILNGEDDTLEKYLNYLKAG
SSDFPIEVMKKAGVDMTNKDYIMKAMKVFEERLNEFEDTLKDLNL

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=202586 BKP56_RS07630 WP_072694511.1 1539550..1541367(+) (pepF) [Marinilactibacillus sp. 15R]
ATGTCAGAAGTAAAATCTTTACCAAAACGTGAAGAAGTTTCAAAAGAATTAACATGGGATTTGACTGTAATTTTTAAGTC
AGATGAAGAATGGGAGAATGCCATTAAAGAAGCTGAGGAAAAGGTTAGAAATGTTTCAAGCTTACAAGGAACACTAGCAA
ATGGAGCAGAGGATTTTTTAAAAGCACTTGAATCTATTCTTGATGTTTTTCGCTCATTTGGATCAGTATATGTATATTCT
CACTTGAAAAATGATCAAGATACATCTAATGGTACTTATCAGGCAATGAATGACCGCGCTCGTTTACTAGCTACTAAAGC
CGGAGAAGCAACTTCTTGGTTTGAACCAGAGCTATTGTCTTTATCAGAAGATAAATTAAAAGGATATTTCGAAGAAAAAG
AAGAATTGACTGTTTACAAACATTATATTGATCAGCTAACTGCGAATCGAGAGCATGTCTTATCCGCAGAAATGGAAGCA
TTATTAGCTGGAGCCAATGATATTTTGACAGCTTCTAGCCAGACTTTTAGTGTGTTAAACAATGCGGACTTAACTTTTCC
TAAAGTGAAAGGGGAACACGGAGAAGAAGTTCAGCTTTCTCATGGAATGTATGGTCAGTTATTAGAAAGCACAAATAGAG
AAGTCAGATCAGAAGCGTTCCGAAAAATGTACGAAATCTATGAAGGATTAAAAAATACATTTGCCAGTACTTTATCTGCA
AATGTGAAAAATCATAACTATCAAGCATCAGTACACAAGTTTAATTCCGCTCGAGAAAGAGCGCTCTCTGCTAATCATAT
TCCCGAATCTGTTCATGAAACACTGATTGATGTTGTTAATGAACATTTACCTTTACTGCATCGTTATATGGAATTGCGCA
AAAAGCTCTTGAATGTTAATGAATTGCACATGTACGATTTATATACTCCGATAACAGGGGAAGCAAGTTTAAAATACACC
TATGAAGAAGCAAAACAAGAAACGCTAAAAGGTCTTGCTCCACTTGGTTCTGAATATAAAAAAGTATTAGAGACAGCTTT
TAACGATCGTTGGATCGATGTTGTGGAAAATAAAGGAAAGCGCAGTGGTGCATATTCATCAGGAGATTATGATACTAACC
CGTATATCTTATTAAACTGGCATGATTCTCTTAATCACTTATATACCCTAGTACATGAACTTGGGCATAGTGCGCACAGT
TATTTTACGCGTGGAAATCAACCGTTTGTTTATGGCGATTATTCAATATTCTTAGCAGAAATAGCTTCTACAACAAATGA
AAATATTCTAACTGATTATTTACTGAAAACGACTGAAGATCCTAAAGCACGTGCTTATGTATTAAATCACTATCTTGACG
GGTTTAAAGGAACGGTCTTCCGTCAAACTCAATTTGCAGAATTTGAACATTTCATGCATGAAGAAGCGGCAAAAGGAATA
CCTTTGACTGCAGATTATTTGAACAAAAATTATGCAGAAATCAACAGTAAGTATTATGGTGAAGCTGTAGAAAAAGATTC
TGAGATTCAGTATGAATGGGCTCGAATTCCACATTTTTATTATAATTATTATGTTTATCAGTATTCTACAGGTTTTTGCG
CTGCCACTGCTTTAGCAGATAATATTTTGAATGGAGAAGATGACACTCTGGAAAAATATTTAAATTATTTGAAAGCAGGA
AGTAGTGATTTTCCAATTGAGGTAATGAAAAAAGCTGGTGTTGATATGACTAATAAAGACTATATTATGAAGGCTATGAA
AGTTTTTGAAGAAAGATTGAACGAATTTGAAGATACTCTAAAAGATTTAAATCTCTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1L4BZ46

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

54.252

97.19

0.527

Multiple sequence alignment