Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BKP56_RS02000 Genome accession   NZ_CP017761
Coordinates   421434..422804 (-) Length   456 a.a.
NCBI ID   WP_072693503.1    Uniprot ID   A0A1L4BWF3
Organism   Marinilactibacillus sp. 15R     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 416434..427804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKP56_RS01985 (BKP56_01970) gltX 418032..419504 (-) 1473 WP_072693500.1 glutamate--tRNA ligase -
  BKP56_RS01990 (BKP56_01975) ispD 419585..420304 (-) 720 WP_072693501.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  BKP56_RS01995 (BKP56_01980) - 420301..421413 (-) 1113 WP_072693502.1 PIN/TRAM domain-containing protein -
  BKP56_RS02000 (BKP56_01985) radA 421434..422804 (-) 1371 WP_072693503.1 DNA repair protein RadA Machinery gene
  BKP56_RS02005 (BKP56_01990) - 422977..423513 (-) 537 WP_072693504.1 dUTP diphosphatase -
  BKP56_RS02010 (BKP56_01995) ugpC 423750..424856 (-) 1107 WP_072693505.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC -
  BKP56_RS02015 (BKP56_02000) - 425033..425587 (-) 555 WP_072693506.1 sugar O-acetyltransferase -
  BKP56_RS02020 (BKP56_02005) - 425600..426739 (-) 1140 WP_072693507.1 glycerate kinase -
  BKP56_RS02025 (BKP56_02010) - 426899..427765 (+) 867 WP_072693508.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49850.25 Da        Isoelectric Point: 7.0188

>NTDB_id=202574 BKP56_RS02000 WP_072693503.1 421434..422804(-) (radA) [Marinilactibacillus sp. 15R]
MAKKAPTVFVCQQCGYESPKYLGKCPSCGTWNQMVEEKLPSKNDSRSRVSISGKTSKAEAITDITIEKEERVKTKLVEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSAQLNNSGGTVLYVSGEESASQIKMRAERLELRGTDFYLYAETDLNLIQE
TIENIKPDYVIIDSIQTMHHPNIDSASGSVSQVRESTATLMQLAKMNNIAIFIVGHVTKEGNIAGPRMLEHMVDTVLYFE
GERHHTFRILRAVKNRFGSTNEIGIFEMRNGGLEEVLNPSQLFLEERLAGATGSSVVAAMEGTRPILVEIQSLISPTVFG
NAKRTASGLDYSRVSLIMAVLEKRAGLLLQNQDAYLKAAGGVKLDEPAIDLSIAVSIASSYKEKETRATDCFIGEIGLTG
EIRRVSKIEQRVNEAAKLGFKRIFIPKNNQDGWTFPEGIEIISCATISEVIKKAFV

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=202574 BKP56_RS02000 WP_072693503.1 421434..422804(-) (radA) [Marinilactibacillus sp. 15R]
TTGGCAAAAAAAGCACCTACAGTATTTGTTTGTCAGCAATGCGGGTATGAGTCTCCCAAGTATTTAGGGAAGTGCCCGAG
TTGTGGAACTTGGAATCAAATGGTTGAAGAAAAACTTCCAAGTAAAAATGACAGTAGAAGTCGTGTATCCATTAGTGGTA
AAACCTCTAAAGCAGAGGCTATTACAGATATTACTATCGAAAAAGAAGAACGAGTCAAAACTAAATTGGTTGAATTCAAT
AGAGTTTTGGGTGGTGGAGTTGTTCCAGGTTCACTTGTATTGATCGGAGGAGACCCGGGTATTGGCAAATCAACTTTGTT
GCTTCAAGTATCTGCTCAACTGAATAATAGTGGAGGAACTGTCTTATATGTCTCTGGAGAAGAAAGTGCCAGCCAGATCA
AGATGCGAGCTGAAAGACTAGAGCTCCGTGGTACAGATTTTTATTTGTACGCAGAAACTGATCTAAATCTTATTCAAGAG
ACTATCGAAAATATTAAACCAGACTATGTAATCATTGATTCAATTCAGACAATGCATCATCCTAATATTGATAGTGCTTC
TGGAAGTGTATCTCAAGTTCGTGAATCAACTGCAACATTGATGCAGCTTGCCAAGATGAACAATATTGCTATTTTCATTG
TAGGTCATGTAACTAAAGAGGGAAACATTGCTGGACCTAGAATGTTAGAGCATATGGTCGATACTGTATTATATTTTGAA
GGAGAAAGACATCACACTTTCCGTATATTAAGAGCAGTAAAAAATCGTTTTGGTTCGACTAACGAAATTGGCATATTCGA
AATGAGAAATGGTGGGTTAGAAGAAGTATTAAACCCTTCTCAGCTGTTTTTAGAAGAAAGGCTTGCTGGAGCAACAGGGT
CTTCTGTAGTAGCAGCAATGGAAGGGACAAGACCCATTTTAGTTGAGATACAATCTCTGATTTCTCCAACTGTTTTCGGT
AACGCTAAGCGAACAGCCAGTGGACTCGATTATTCTAGAGTATCTTTGATTATGGCCGTCCTTGAAAAAAGAGCGGGTCT
GCTTCTGCAGAATCAAGATGCCTATTTAAAAGCAGCTGGTGGGGTCAAACTAGACGAACCAGCTATTGACTTGTCTATCG
CTGTTAGTATTGCCTCTAGTTATAAAGAAAAAGAAACTAGAGCAACTGACTGTTTTATTGGAGAGATCGGACTGACTGGA
GAAATTAGACGAGTATCAAAAATAGAGCAAAGAGTGAATGAAGCAGCCAAGTTAGGGTTTAAAAGGATTTTTATTCCAAA
AAACAATCAGGATGGCTGGACTTTCCCTGAGGGAATCGAAATTATTAGTTGTGCTACTATCTCAGAAGTGATAAAAAAAG
CATTTGTATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(79-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1L4BWF3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

70.549

99.781

0.704
  radA Streptococcus pneumoniae D39

70.549

99.781

0.704
  radA Streptococcus pneumoniae R6

70.549

99.781

0.704
  radA Streptococcus pneumoniae TIGR4

70.549

99.781

0.704
  radA Streptococcus mitis NCTC 12261

70.549

99.781

0.704
  radA Streptococcus mitis SK321

70.549

99.781

0.704
  radA Bacillus subtilis subsp. subtilis str. 168

66.667

100

0.667

Multiple sequence alignment