Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BJN34_RS10810 Genome accession   NZ_CP017757
Coordinates   2363369..2364730 (-) Length   453 a.a.
NCBI ID   WP_078196607.1    Uniprot ID   A0A1U9UNR1
Organism   Cupriavidus necator strain NH9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2358369..2369730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJN34_RS10785 (BJN34_10710) - 2360240..2360755 (-) 516 WP_234824797.1 universal stress protein -
  BJN34_RS10790 (BJN34_10715) - 2360806..2361228 (-) 423 WP_078196603.1 MarR family winged helix-turn-helix transcriptional regulator -
  BJN34_RS10795 (BJN34_10720) - 2361353..2361859 (-) 507 WP_078196604.1 hypothetical protein -
  BJN34_RS10800 (BJN34_10725) - 2362162..2362647 (-) 486 WP_078196605.1 disulfide bond formation protein B -
  BJN34_RS10805 (BJN34_10730) - 2362803..2363366 (-) 564 WP_078196606.1 GNAT family N-acetyltransferase -
  BJN34_RS10810 (BJN34_10735) radA 2363369..2364730 (-) 1362 WP_078196607.1 DNA repair protein RadA Machinery gene
  BJN34_RS10815 (BJN34_10740) alr 2364839..2365960 (-) 1122 WP_078196608.1 alanine racemase -
  BJN34_RS10820 (BJN34_10745) lplT 2366529..2367848 (+) 1320 WP_078196609.1 lysophospholipid transporter LplT -
  BJN34_RS10825 (BJN34_10750) - 2367892..2369028 (-) 1137 WP_078196610.1 DUF1853 family protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48322.65 Da        Isoelectric Point: 7.2699

>NTDB_id=202561 BJN34_RS10810 WP_078196607.1 2363369..2364730(-) (radA) [Cupriavidus necator strain NH9]
MAKTKTVYTCTECGGTTPRWAGQCPHCQQWNTLVETVAESAANKRFQPLAASATVRKLAEIDAADVPRFSSGIDEFDRVL
GGGLVSGGVVLIGGDPGIGKSTLLLQALANLAGQRRVLYVSGEESGAQIALRAQRLGVESPSLGLLAEIQLEKIQATLEV
EKPEVAVIDSIQTLYSEALTSAPGSVAQVRECAAQLTRIAKSSGITIILVGHVTKEGSLAGPRVLEHIVDTVLYFEGDTH
SSHRLIRAFKNRFGAVNELGVFAMTERGLRGISNPSALFLSHHEEAVPGSCVLVTQEGTRPLLVEIQALVDTAHVPNPRR
LAVGLEQNRLALLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLSIHSSMRNKPLPRGLVVFGEVGLAGEIRP
SPRGQERLKEAAKLGFTIAVIPKANAPKQKIDGLEVIAVDRIEQAIDRVRHLD

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=202561 BJN34_RS10810 WP_078196607.1 2363369..2364730(-) (radA) [Cupriavidus necator strain NH9]
TTGGCCAAGACCAAGACTGTCTATACCTGTACCGAATGCGGCGGCACCACGCCGCGCTGGGCCGGCCAGTGCCCGCACTG
CCAGCAGTGGAACACGCTGGTGGAGACGGTGGCAGAGTCCGCCGCGAACAAGCGCTTCCAGCCGCTGGCCGCGTCGGCCA
CGGTGCGCAAGCTGGCGGAAATCGACGCCGCGGACGTGCCGCGCTTCTCCAGCGGCATCGATGAATTCGACCGCGTGCTG
GGCGGCGGCCTGGTGTCGGGCGGGGTGGTGTTGATTGGCGGCGATCCCGGCATCGGCAAGTCCACGCTGCTGCTGCAGGC
GCTGGCCAACCTGGCCGGGCAGCGCCGGGTGCTCTATGTCAGCGGCGAAGAATCCGGCGCGCAGATCGCACTGCGCGCGC
AGCGCCTGGGCGTGGAAAGCCCGTCGCTGGGCCTGCTCGCCGAAATCCAGCTCGAGAAGATCCAGGCCACGCTGGAAGTG
GAAAAGCCCGAAGTGGCCGTGATCGACTCGATCCAGACGCTGTATTCCGAAGCGCTGACCTCGGCCCCGGGCTCGGTGGC
GCAGGTGCGCGAATGCGCGGCGCAGCTCACGCGCATTGCCAAGAGCAGCGGCATCACCATCATCCTGGTCGGCCACGTGA
CCAAGGAAGGCAGCCTGGCGGGGCCGCGCGTGCTGGAGCATATCGTCGATACGGTGCTGTATTTCGAAGGCGATACCCAC
TCGTCGCACCGCCTGATCCGCGCCTTCAAGAACCGCTTCGGCGCGGTCAATGAGCTGGGCGTGTTTGCCATGACCGAACG
GGGTCTGCGCGGCATCAGCAACCCATCGGCCTTGTTCCTGTCGCACCACGAAGAAGCCGTGCCGGGCTCGTGCGTGCTGG
TGACGCAGGAGGGCACGCGTCCGCTGCTGGTGGAGATCCAGGCGCTGGTCGATACCGCCCACGTGCCCAATCCGCGCCGG
CTGGCGGTGGGGCTGGAACAGAACCGGCTGGCGCTGCTGCTGGCGGTCCTGCACCGGCACGCGGGCATCGCCTGCTTTGA
TCAGGACGTGTTCCTGAATGCGGTGGGCGGGGTCAAGATCACCGAACCCGCCGCCGACCTGGCGGTGCTGCTGTCGATCC
ACTCGTCGATGCGCAACAAGCCGCTGCCGCGCGGCCTGGTGGTGTTCGGCGAAGTCGGCCTGGCGGGCGAGATCCGCCCC
AGCCCGCGCGGACAGGAGCGCCTGAAGGAAGCCGCCAAGCTGGGCTTTACGATCGCGGTGATTCCCAAGGCCAACGCGCC
CAAGCAGAAGATCGACGGGCTCGAAGTGATTGCGGTCGATCGCATCGAGCAGGCCATCGACCGCGTGCGCCATCTGGACT
GA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(64-217)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1U9UNR1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.327

99.779

0.512
  radA Streptococcus mitis SK321

47.137

100

0.472
  radA Streptococcus pneumoniae D39

47.033

100

0.472
  radA Streptococcus pneumoniae TIGR4

47.033

100

0.472
  radA Streptococcus pneumoniae R6

47.033

100

0.472
  radA Streptococcus pneumoniae Rx1

47.033

100

0.472
  radA Streptococcus mitis NCTC 12261

46.813

100

0.47

Multiple sequence alignment