Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   BKK80_RS08010 Genome accession   NZ_CP017754
Coordinates   1835847..1838351 (+) Length   834 a.a.
NCBI ID   WP_071068825.1    Uniprot ID   -
Organism   Cupriavidus malaysiensis strain USMAA1020 isolate pure     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1830847..1843351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKK80_RS07990 (BKK80_07990) - 1831681..1832772 (-) 1092 WP_071012118.1 hypothetical protein -
  BKK80_RS07995 (BKK80_07995) - 1832904..1834154 (+) 1251 WP_071012119.1 lipoprotein-releasing ABC transporter permease subunit -
  BKK80_RS08000 (BKK80_08000) lolD 1834147..1834908 (+) 762 WP_083384013.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  BKK80_RS08005 (BKK80_08005) - 1834932..1835774 (+) 843 WP_071012121.1 TatD family hydrolase -
  BKK80_RS08010 (BKK80_08010) comA 1835847..1838351 (+) 2505 WP_071068825.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  BKK80_RS08015 (BKK80_08015) - 1838391..1839305 (-) 915 WP_071012124.1 MurR/RpiR family transcriptional regulator -
  BKK80_RS08020 (BKK80_08020) edd 1839567..1841450 (+) 1884 WP_071068826.1 phosphogluconate dehydratase -
  BKK80_RS08025 (BKK80_08025) - 1841608..1842105 (+) 498 WP_071016243.1 gluconokinase -

Sequence

Protein


Download         Length: 834 a.a.        Molecular weight: 87177.34 Da        Isoelectric Point: 11.5470

>NTDB_id=202536 BKK80_RS08010 WP_071068825.1 1835847..1838351(+) (comA) [Cupriavidus malaysiensis strain USMAA1020 isolate pure]
MRLFLLAFVTGCWCLQQQPVLPGRAAAAVLLLAAALLAAAALYWRRRARPAARAAVCLLGLLAGFGWAGGRAVQALDAWL
PPALDGSDVRVRGVVAGLPAEAERGLRFRFAIEQEVAGAGGGAAAGAEAGGARLPPEILLAWNEAPPGLRPGERREFVVR
LRRPRGLANPHGFDYAYWLLGQGVGATGYVRSAGEGHAMAAGERLAWRIASWRHALRAHLRANLPPDARYGPVLVALVVG
DQRGISAADREIFNRTGIGHLISISGLHITMISGMAGALAAWAWRHAFGLGRRWRRPPPLWLPARQVGLLVALPAGIGYG
LVAGLEVPALRTVAMLVVAVLASWSGRTVPGSLVLGWAALAALVVDPWGVMAPGFWLSFSAVAVIFLAAGRPPAAPAADG
ADGARADRWPARLRVALAQAAHTQWVVTLGLVPATLLLFQQTSLVSPLANAVAIPLVSFVVTPLSLLAAILPSPLAAPLL
ALAHACLALLGSLLAWLSAPSWAVWRAAAAGPVAFALALPGVACLLAPRGFGWRLRWRGLVLLLPLLVAGRTPVAAGAFR
ATAFDVGQGGAVLVETRRHALLFDTGPAYGESSSAGERVIVPHLRAAGLGRLDMLMISHEHADHAGGVGAVLDAVPVAAL
RTAAPPAHALLSPPLRSPRAWEPCAAGQQWEWDGVRFAVLHPPAAQSQSPAYGSNARSCVLHVSAQAGDGAAPSLLLTGD
IERAEEAALLSSLPAQALRASVLMVPHHGSGTSSSPAFLAAVAPQAAVFQLGHANRFRHPRADVWARYGAQGVARYRSDE
NGAVVIEAGADGVAITPYRQQVRRYWREAPPAPR

Nucleotide


Download         Length: 2505 bp        

>NTDB_id=202536 BKK80_RS08010 WP_071068825.1 1835847..1838351(+) (comA) [Cupriavidus malaysiensis strain USMAA1020 isolate pure]
ATGCGCCTGTTCCTGCTGGCTTTCGTCACCGGTTGCTGGTGCCTGCAGCAGCAGCCGGTGCTGCCCGGCCGGGCAGCGGC
CGCCGTGCTGCTGCTGGCCGCCGCGCTGCTGGCGGCGGCCGCGTTGTACTGGCGGCGCCGGGCGCGGCCGGCGGCGCGTG
CGGCGGTCTGCCTGCTGGGCTTGCTGGCCGGCTTCGGCTGGGCCGGCGGGCGCGCCGTGCAGGCGCTGGATGCCTGGCTG
CCCCCCGCGCTCGACGGCAGCGATGTGCGCGTGCGCGGCGTGGTGGCCGGCCTGCCGGCCGAAGCCGAGCGCGGCCTGCG
TTTCCGCTTTGCCATCGAGCAGGAGGTTGCCGGCGCAGGCGGTGGAGCTGCTGCCGGCGCGGAAGCAGGTGGCGCGCGCC
TGCCGCCCGAGATCCTGCTGGCCTGGAACGAGGCGCCGCCCGGACTGCGGCCGGGCGAGCGGCGCGAGTTCGTGGTGCGC
CTGCGGCGGCCGCGCGGGCTAGCGAATCCACACGGGTTCGACTATGCCTACTGGCTGCTCGGCCAAGGCGTGGGGGCGAC
CGGCTACGTGCGCAGCGCGGGCGAGGGCCACGCCATGGCGGCGGGGGAGCGGCTGGCCTGGCGCATCGCCTCGTGGCGCC
ACGCGCTGCGCGCGCACCTGCGCGCCAACCTGCCGCCGGATGCGCGCTACGGCCCGGTGCTGGTGGCGCTGGTTGTGGGC
GACCAGCGCGGCATCTCAGCTGCCGACAGGGAGATATTCAACCGCACCGGCATCGGCCACCTGATCAGCATCTCCGGGCT
CCATATCACCATGATCTCCGGCATGGCCGGTGCGCTGGCCGCCTGGGCCTGGCGCCATGCCTTCGGGCTGGGCCGGCGCT
GGCGCCGGCCGCCGCCGCTATGGCTGCCGGCGCGGCAGGTCGGCCTGCTGGTGGCGCTGCCGGCAGGCATCGGCTACGGC
CTGGTGGCGGGACTCGAGGTGCCTGCCCTGCGCACGGTGGCAATGCTGGTGGTGGCGGTGCTGGCATCCTGGAGCGGACG
TACGGTGCCGGGCTCGCTGGTGCTCGGCTGGGCCGCGCTGGCGGCGCTGGTTGTCGATCCATGGGGCGTGATGGCGCCCG
GATTCTGGCTCTCCTTCAGTGCCGTGGCGGTGATCTTCCTGGCCGCGGGGCGTCCGCCCGCGGCCCCCGCGGCGGACGGC
GCGGACGGCGCCCGCGCGGACCGCTGGCCGGCCCGCCTGCGGGTGGCGCTGGCACAAGCCGCCCATACCCAATGGGTGGT
CACGCTGGGCCTGGTGCCGGCCACGCTGCTGTTGTTCCAGCAGACCTCGCTGGTCTCGCCGCTGGCCAACGCGGTGGCCA
TCCCGCTGGTGAGTTTCGTGGTGACGCCGCTGTCGCTGCTGGCCGCCATCCTGCCGTCGCCGCTGGCCGCACCGCTGCTG
GCGCTGGCCCACGCCTGCCTGGCCCTGCTGGGCAGCCTGCTGGCCTGGCTGTCGGCGCCGTCCTGGGCGGTCTGGCGTGC
GGCGGCGGCCGGTCCGGTGGCCTTCGCGCTGGCCCTGCCGGGCGTCGCCTGCCTGCTGGCACCGCGTGGCTTCGGCTGGC
GCCTGCGCTGGCGCGGGCTGGTGCTGCTGCTGCCGCTGCTGGTGGCGGGGCGGACCCCGGTGGCGGCCGGCGCCTTCCGT
GCGACGGCCTTCGATGTCGGCCAGGGCGGTGCGGTGCTGGTCGAGACGCGGCGGCATGCGCTGCTGTTCGACACCGGACC
GGCCTACGGCGAAAGCTCCAGCGCGGGCGAGCGGGTCATCGTGCCGCACCTGCGCGCGGCCGGCCTGGGGCGCCTCGATA
TGCTGATGATCAGCCACGAGCACGCCGACCATGCCGGCGGAGTCGGCGCGGTGCTGGATGCCGTGCCGGTGGCGGCGCTG
CGCACCGCGGCGCCGCCCGCGCATGCGCTGCTGTCGCCGCCGCTGCGGTCACCACGCGCGTGGGAGCCCTGCGCCGCCGG
GCAGCAATGGGAGTGGGACGGGGTGCGTTTCGCCGTGCTGCATCCGCCGGCGGCGCAGTCGCAGTCGCCGGCCTATGGCA
GCAACGCGCGCAGCTGCGTGCTCCATGTGTCGGCGCAGGCCGGTGACGGGGCGGCCCCGAGCCTGCTGCTGACCGGCGAT
ATCGAGCGTGCCGAGGAGGCGGCGCTGCTGTCGTCGTTGCCGGCGCAAGCGCTGCGCGCCAGCGTGCTGATGGTGCCGCA
CCATGGCAGCGGCACGTCTTCCAGCCCGGCCTTCCTTGCCGCGGTGGCACCGCAGGCCGCTGTGTTCCAGCTGGGCCATG
CCAATCGCTTCCGTCATCCGCGTGCCGATGTCTGGGCCCGCTATGGTGCCCAAGGCGTCGCGCGCTACCGCTCTGATGAG
AACGGCGCGGTGGTGATCGAGGCCGGGGCGGACGGCGTGGCGATCACGCCGTACCGTCAGCAGGTCCGGCGCTACTGGCG
CGAGGCGCCGCCGGCACCGCGCTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(237-526)

Metallo-beta-lactamase superfamily (Lactamase_B)

(567-640)

Domain of unknown function (DUF4131) (DUF4131)

(27-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Ralstonia pseudosolanacearum GMI1000

46.882

100

0.487

Multiple sequence alignment