Detailed information NTG0202515

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: BKK81_RS08700
• Genome accession: NZ_CP017751
• Coordinates: 1977342..1979846 (+)
• Length: 834 a.a.
• NCBI ID: WP_071012123.1
• Uniprot ID: -
• Organism: Cupriavidus sp. USMAHM13 isolate pure
• Function: DNA uptake (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	1968184..1979846	1977342..1979846	within	0

Gene organization within MGE regions

Location: 1968184..1979846

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BKK81_RS08660 (BKK81_08660)	-	1968184..1968942 (-)	759	WP_071012114.1	SDR family oxidoreductase	-
BKK81_RS08670 (BKK81_08670)	-	1970444..1971217 (+)	774	WP_083384012.1	peptidoglycan DD-metalloendopeptidase family protein	-
BKK81_RS08675 (BKK81_08675)	recJ	1971302..1972999 (-)	1698	WP_071012116.1	single-stranded-DNA-specific exonuclease RecJ	-
BKK81_RS08680 (BKK81_08680)	-	1973166..1974257 (-)	1092	WP_071012118.1	hypothetical protein	-
BKK81_RS08685 (BKK81_08685)	-	1974399..1975649 (+)	1251	WP_071012119.1	lipoprotein-releasing ABC transporter permease subunit	-
BKK81_RS08690 (BKK81_08690)	lolD	1975642..1976403 (+)	762	WP_083384013.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
BKK81_RS08695 (BKK81_08695)	-	1976427..1977269 (+)	843	WP_071012121.1	TatD family hydrolase	-
BKK81_RS08700 (BKK81_08700)	comA	1977342..1979846 (+)	2505	WP_071012123.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene

Sequence

Protein

• Length: 834 a.a.
• Molecular weight: 87223.36 Da
• Isoelectric Point: 11.5470

>NTDB_id=202515 BKK81_RS08700 WP_071012123.1 1977342..1979846(+) (comA) [Cupriavidus sp. USMAHM13 isolate pure]
MRLFLLAFVTGCWCLQQQPVLPGRAAAAVLLLAAALLAASALYWRRRARPAARAAVCLLGLLAGFGWAGGRAVQALDAWL
PPALDGSDVRVRGVVAGLPAEAERGLRFRFAIEQEVAGAGGGAAAGAEAGGARLPPEILLAWNEAPPGLRPGERREFVVR
LRRPRGLANPHGFDYAYWLLGQGVGATGYVRSAGEGHAMAAGERLAWRIASWRHALRTHLRANLPPDARYGPVLVALVVG
DQRGISAADREIFNRTGIGHLISISGLHITMISGMAGALAAWAWRHAFGLGRRWRRPPPLWLPARQVGLLVALPAGIGYG
LVAGLEVPALRTVAMLVVAVLASWSGRTVPGSLVLGWAALAALVVDPWGVMAPGFWLSFSAVAVIFLAAGRPPAAPAADG
ADGARADRWPARLRVALAQAAHTQWVVTLGLVPATLLLFQQTSLVSPLANAVAIPLVSFVVTPLSLLAAILPSPLAAPLL
ALAHACLALLGSLLAWLSAPSWAVWRAAAAGPVAFALALPGVACLLAPRGFGWRLRWRGLVLLLPLLVAGRTPVAAGAFR
ATAFDVGQGGAVLVETRRHALLFDTGPAYGESSSAGERVIVPHLRAAGLGRLDMLMISHEHADHAGGVGAVLDAVPVAAL
RTAAPPAHALLSPPLRSPRAWEPCAAGQQWEWDGVRFAVLHPPAAQSQSPAYGSNARSCVLHVSAQAGDGAAPSLLLTGD
IERAEEAALLSSLPAQALRASVLMVPHHGSGTSSSPAFLAAVAPQAAVFQLGHANRFRHPRADVWARYGAQGVARYRSDE
NGAVVIEAGADGVAITPYRQQVRRYWREAPPAPR

Nucleotide

• Length: 2505 bp

>NTDB_id=202515 BKK81_RS08700 WP_071012123.1 1977342..1979846(+) (comA) [Cupriavidus sp. USMAHM13 isolate pure]
ATGCGCCTGTTCCTGCTGGCTTTCGTCACCGGCTGCTGGTGCCTGCAGCAGCAGCCGGTGCTGCCCGGCCGGGCAGCGGC
CGCCGTGCTGCTGCTGGCCGCCGCGCTGCTGGCGGCGTCCGCGTTGTACTGGCGGCGCCGGGCGCGGCCGGCGGCGCGTG
CGGCGGTCTGCCTGCTGGGCTTGCTGGCCGGCTTCGGCTGGGCCGGCGGGCGCGCCGTGCAGGCGCTGGATGCCTGGCTG
CCCCCCGCGCTCGACGGCAGCGATGTGCGCGTGCGCGGCGTGGTGGCCGGCCTGCCGGCCGAAGCCGAGCGCGGCCTGCG
TTTCCGCTTTGCCATCGAGCAGGAGGTTGCCGGCGCAGGCGGTGGAGCTGCTGCCGGCGCGGAAGCAGGTGGCGCGCGCC
TGCCGCCCGAGATCCTGCTGGCCTGGAACGAGGCGCCGCCCGGACTGCGGCCGGGCGAGCGGCGCGAGTTCGTGGTGCGC
CTGCGGCGGCCGCGCGGGCTAGCGAATCCACACGGGTTCGACTATGCCTACTGGCTGCTCGGCCAAGGCGTGGGGGCGAC
CGGCTACGTGCGCAGCGCGGGCGAGGGCCACGCCATGGCGGCGGGGGAGCGGCTGGCCTGGCGCATCGCCTCGTGGCGCC
ACGCGCTGCGCACGCACCTGCGCGCCAACCTGCCGCCGGATGCGCGCTACGGCCCGGTGCTGGTGGCGCTGGTTGTGGGC
GACCAGCGCGGCATCTCAGCTGCCGACAGGGAGATATTCAACCGCACCGGCATCGGCCACCTGATCAGCATCTCCGGGCT
CCATATCACCATGATCTCCGGCATGGCCGGTGCGCTGGCCGCCTGGGCCTGGCGCCATGCCTTCGGGCTGGGCCGGCGCT
GGCGCCGGCCGCCGCCGCTATGGCTGCCGGCGCGGCAGGTCGGCCTGCTGGTGGCGCTGCCGGCAGGCATTGGCTACGGC
CTGGTGGCGGGACTCGAGGTGCCTGCCCTGCGCACGGTGGCAATGCTGGTGGTGGCGGTGCTGGCATCCTGGAGCGGACG
TACGGTGCCGGGCTCGCTGGTGCTCGGCTGGGCCGCGCTGGCGGCGCTGGTTGTCGATCCATGGGGCGTGATGGCGCCCG
GATTCTGGCTCTCCTTCAGTGCCGTGGCGGTGATCTTCCTGGCCGCGGGGCGTCCGCCCGCGGCCCCCGCGGCGGACGGC
GCGGACGGCGCCCGCGCGGACCGCTGGCCGGCCCGCCTGCGGGTGGCGCTGGCACAAGCCGCCCATACCCAATGGGTGGT
CACGCTGGGCCTGGTGCCGGCCACGCTGCTGTTGTTCCAGCAGACCTCGCTGGTCTCGCCGCTGGCCAACGCGGTGGCCA
TCCCGCTGGTGAGTTTCGTGGTGACGCCGCTGTCGCTGCTGGCCGCCATCCTGCCGTCGCCGCTGGCCGCACCGCTGCTG
GCGCTGGCCCACGCCTGCCTGGCCCTGCTGGGCAGCCTGCTGGCCTGGCTGTCGGCGCCGTCCTGGGCGGTCTGGCGTGC
GGCGGCGGCCGGTCCGGTGGCCTTCGCGCTGGCCCTGCCGGGCGTCGCCTGCCTGCTGGCACCGCGTGGCTTCGGCTGGC
GCCTGCGCTGGCGCGGGCTGGTGCTGCTGCTGCCGCTGCTGGTGGCGGGGCGGACCCCGGTGGCGGCCGGCGCCTTCCGT
GCGACGGCCTTCGATGTCGGCCAGGGCGGTGCGGTGCTGGTCGAGACGCGGCGGCATGCGCTGCTGTTCGACACCGGACC
GGCCTACGGCGAAAGCTCCAGCGCGGGCGAGCGGGTCATCGTGCCGCACCTGCGCGCGGCCGGCCTGGGGCGCCTCGATA
TGCTGATGATCAGCCACGAGCACGCCGACCATGCCGGCGGAGTCGGCGCGGTGCTGGATGCCGTGCCGGTGGCGGCGCTG
CGCACCGCGGCGCCGCCCGCGCATGCGCTGCTGTCGCCGCCGCTGCGGTCACCACGCGCGTGGGAGCCCTGCGCCGCCGG
GCAGCAATGGGAGTGGGACGGGGTGCGTTTCGCCGTGCTGCATCCGCCGGCGGCGCAGTCGCAGTCGCCGGCCTATGGCA
GCAACGCGCGCAGCTGCGTGCTCCATGTGTCGGCGCAGGCCGGTGACGGGGCGGCCCCGAGCCTGCTGCTGACCGGCGAT
ATCGAGCGTGCCGAGGAGGCGGCGCTGCTGTCGTCGTTGCCGGCGCAAGCGCTGCGCGCCAGCGTGCTGATGGTGCCGCA
CCATGGCAGCGGCACGTCTTCCAGCCCGGCCTTCCTTGCCGCGGTGGCACCGCAGGCCGCTGTGTTCCAGCTGGGCCATG
CCAATCGCTTCCGTCATCCGCGTGCCGATGTCTGGGCCCGCTATGGTGCCCAAGGCGTCGCGCGCTACCGCTCGGATGAG
AACGGCGCGGTGGTGATCGAGGCCGGGGCGGACGGCGTGGCGATCACGCCGTACCGTCAGCAGGTCCGGCGCTACTGGCG
CGAGGCGCCGCCGGCACCGCGCTGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (237-526)

• Metallo-beta-lactamase superfamily (Lactamase_B) (567-640)

• Domain of unknown function (DUF4131) (DUF4131) (28-193)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Ralstonia pseudosolanacearum GMI1000	46.767	100	0.486