Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   BKK79_RS04130 Genome accession   NZ_CP017748
Coordinates   936600..939104 (-) Length   834 a.a.
NCBI ID   WP_071037205.1    Uniprot ID   -
Organism   Cupriavidus sp. USMAA2-4 isolate pure     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 931600..944104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKK79_RS04115 (BKK79_04115) - 932846..933343 (-) 498 WP_071038421.1 gluconokinase -
  BKK79_RS04120 (BKK79_04120) edd 933501..935384 (-) 1884 WP_071037204.1 phosphogluconate dehydratase -
  BKK79_RS04125 (BKK79_04125) - 935646..936560 (+) 915 WP_071012124.1 MurR/RpiR family transcriptional regulator -
  BKK79_RS04130 (BKK79_04130) comA 936600..939104 (-) 2505 WP_071037205.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  BKK79_RS04135 (BKK79_04135) - 939177..940019 (-) 843 WP_071037206.1 TatD family hydrolase -
  BKK79_RS04140 (BKK79_04140) lolD 940043..940804 (-) 762 WP_083384013.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  BKK79_RS04145 (BKK79_04145) - 940797..942047 (-) 1251 WP_071012119.1 lipoprotein-releasing ABC transporter permease subunit -
  BKK79_RS04150 (BKK79_04150) - 942179..943270 (+) 1092 WP_071037207.1 hypothetical protein -

Sequence

Protein


Download         Length: 834 a.a.        Molecular weight: 87187.37 Da        Isoelectric Point: 11.5470

>NTDB_id=202492 BKK79_RS04130 WP_071037205.1 936600..939104(-) (comA) [Cupriavidus sp. USMAA2-4 isolate pure]
MRLFLLAFVTGCWCLQQQPVLPGRAAAAVLLLAAALLAAAALYWRRRARPAARAAVCLLGLLAGFGWAGGRAVQALDAWL
PPALDGSDVRVRGVVAGLPAEAERGLRFRFAIEQEVAGAGGGAAAGAEAGGARLPPEILLAWNEAPPGLRPGERREFVVR
LRRPRGLANPHGFDYAYWLLGQGVGATGYVRSAGEGHAMAAGERLAWRIASWRHALRAHLRANLPPDARYGPVLVALVVG
DQRGISAADREIFNRTGIGHLISISGLHITMISGMAGALAAWAWRHAFGLGRRWRRPPPLWLPARQVGLLVALPAGIGYG
LVAGLEVPALRTVAMLVVAVLASWSGRTVPGSLVLGWAALAALVVDPWGVMAPGFWLSFSAVAVIFLAAGRPPAAPAADG
ADGARADRWPARLRVALAQAAHTQWVVTLGLVPATLLLFQQTSLVSPLANAVAIPLVSFVVTPLSLLAAILPSPLAAPLL
ALAHACLALLGSLLAWLSAPSWAVWRAAAAGPVAFALALPGVACLLAPRGFGWRLRWRGLVLLLPLLVAGRTPVAAGAFR
ATAFDVGQGGAVLVETRRHALLFDTGPAYGESSSAGERVIVPHLRAAGLGRLDMLMISHEHADHAGGVGAVLDAVPVAAL
RTAAPPAHALLSPPLRPPRAWEPCAAGQQWEWDGVRFAVLHPPAAQSQSPAYGSNARSCVLHVSAQAGDGAAPSLLLTGD
IERAEEAALLSSLPAQALRASVLMVPHHGSGTSSSPAFLAAVAPQAAVFQLGHANRFRHPRADVWARYGAQGVARYRSDE
NGAVVIEAGADGVAITPYRQQVRRYWREAPPAPR

Nucleotide


Download         Length: 2505 bp        

>NTDB_id=202492 BKK79_RS04130 WP_071037205.1 936600..939104(-) (comA) [Cupriavidus sp. USMAA2-4 isolate pure]
ATGCGCCTGTTCCTGCTGGCTTTCGTCACCGGCTGCTGGTGCCTGCAGCAGCAGCCGGTGCTGCCCGGCCGGGCAGCGGC
CGCCGTGCTGCTGCTGGCCGCCGCGCTGCTGGCGGCGGCCGCGTTGTACTGGCGGCGCCGGGCGCGGCCGGCGGCGCGTG
CGGCGGTCTGCCTGCTGGGCTTGCTGGCCGGCTTCGGCTGGGCCGGCGGGCGCGCCGTGCAGGCGCTGGATGCCTGGCTG
CCCCCCGCGCTCGACGGCAGCGATGTGCGCGTGCGCGGCGTGGTGGCCGGCCTGCCGGCCGAAGCCGAGCGCGGCCTGCG
TTTCCGCTTTGCCATCGAGCAGGAGGTTGCCGGCGCAGGCGGTGGAGCTGCTGCCGGCGCGGAAGCAGGTGGCGCGCGCC
TGCCGCCCGAGATCCTGCTGGCCTGGAACGAGGCGCCGCCCGGACTGCGGCCGGGCGAGCGGCGCGAGTTCGTGGTGCGC
CTGCGGCGGCCGCGCGGGCTAGCGAATCCACACGGGTTCGACTATGCCTACTGGCTGCTCGGCCAAGGCGTGGGGGCGAC
CGGCTACGTGCGCAGCGCGGGCGAGGGCCACGCCATGGCGGCGGGGGAGCGGCTGGCCTGGCGCATCGCCTCGTGGCGCC
ACGCGCTGCGCGCGCACCTGCGCGCCAACCTGCCGCCGGATGCGCGCTACGGCCCGGTGCTGGTGGCGCTGGTTGTGGGC
GACCAGCGCGGCATCTCAGCTGCCGACAGGGAGATATTCAACCGCACCGGCATCGGCCACCTGATCAGCATCTCCGGGCT
CCATATCACCATGATCTCCGGCATGGCCGGTGCGCTGGCCGCCTGGGCCTGGCGCCATGCCTTCGGGCTGGGCCGGCGCT
GGCGCCGGCCGCCGCCGCTATGGCTGCCGGCGCGGCAGGTCGGCCTGCTGGTGGCGCTGCCGGCAGGCATCGGCTACGGC
CTGGTGGCGGGACTCGAGGTGCCTGCCCTGCGCACGGTGGCAATGCTGGTGGTGGCGGTGCTGGCATCCTGGAGCGGACG
TACGGTGCCGGGCTCGCTGGTGCTCGGCTGGGCCGCGCTGGCGGCGCTGGTTGTCGATCCATGGGGCGTGATGGCGCCCG
GATTCTGGCTCTCCTTCAGTGCCGTGGCGGTGATCTTCCTGGCCGCGGGGCGTCCGCCCGCGGCCCCCGCGGCGGACGGC
GCGGACGGCGCCCGCGCGGACCGCTGGCCGGCCCGCCTGCGGGTGGCGCTGGCACAAGCCGCCCATACCCAATGGGTGGT
CACGCTGGGCCTGGTGCCGGCCACGCTGCTGTTGTTCCAGCAGACCTCGCTGGTCTCGCCGCTGGCCAACGCGGTGGCCA
TCCCGCTGGTGAGTTTCGTGGTGACGCCGCTGTCGCTGCTGGCCGCCATCCTGCCGTCGCCGCTGGCCGCACCGCTGCTG
GCGCTGGCCCACGCCTGCCTGGCCCTGCTGGGCAGCCTGCTGGCCTGGCTGTCGGCGCCGTCCTGGGCGGTCTGGCGTGC
GGCGGCGGCCGGTCCGGTGGCCTTCGCGCTGGCCCTGCCGGGCGTCGCCTGCCTGCTGGCACCGCGTGGCTTCGGCTGGC
GCCTGCGCTGGCGCGGGCTGGTGCTGCTGCTGCCGCTGCTGGTGGCGGGGCGGACCCCGGTGGCGGCAGGCGCCTTCCGT
GCGACGGCCTTCGATGTCGGCCAGGGCGGTGCGGTGCTGGTCGAGACGCGGCGGCATGCGCTGCTGTTCGACACCGGACC
GGCCTACGGCGAAAGCTCCAGCGCGGGCGAGCGGGTCATCGTGCCGCACCTGCGCGCGGCCGGCCTGGGGCGCCTCGATA
TGCTGATGATCAGCCACGAGCACGCCGACCATGCCGGCGGAGTCGGCGCGGTGCTGGATGCCGTGCCGGTGGCGGCGCTG
CGCACCGCGGCGCCGCCCGCGCATGCGCTGCTGTCGCCGCCGCTGCGGCCACCACGCGCGTGGGAGCCCTGCGCCGCCGG
GCAGCAATGGGAGTGGGACGGGGTGCGTTTCGCCGTGCTGCATCCGCCGGCGGCGCAGTCGCAGTCGCCGGCCTATGGCA
GCAACGCGCGCAGCTGCGTGCTCCATGTGTCGGCGCAGGCCGGTGACGGGGCGGCCCCGAGCCTGCTGCTGACCGGCGAT
ATCGAGCGTGCCGAGGAGGCGGCGCTGCTGTCGTCGTTGCCGGCGCAAGCGCTGCGCGCCAGTGTGCTGATGGTGCCGCA
CCATGGCAGCGGCACGTCTTCCAGCCCGGCCTTCCTTGCCGCGGTGGCACCGCAGGCCGCTGTGTTCCAGCTGGGCCATG
CCAATCGCTTCCGTCATCCGCGTGCCGATGTCTGGGCCCGCTATGGTGCCCAAGGCGTCGCGCGCTACCGCTCGGATGAG
AACGGCGCGGTGGTGATCGAGGCCGGGGCGGACGGCGTGGCGATCACGCCGTACCGTCAGCAGGTCCGGCGCTACTGGCG
CGAGGCGCCGCCGGCACCGCGCTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(237-526)

Metallo-beta-lactamase superfamily (Lactamase_B)

(567-641)

Domain of unknown function (DUF4131) (DUF4131)

(27-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Ralstonia pseudosolanacearum GMI1000

46.882

100

0.487

Multiple sequence alignment