Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BI197_RS13655 Genome accession   NZ_CP017747
Coordinates   2848273..2848563 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain SYBC H47     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2843273..2853563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BI197_RS13640 - 2843496..2844821 (-) 1326 WP_088005470.1 G5 and 3D domain-containing protein -
  BI197_RS13645 - 2844956..2845723 (-) 768 WP_032868379.1 TatD family hydrolase -
  BI197_RS13650 metG 2845799..2847790 (-) 1992 WP_071392213.1 methionine--tRNA ligase -
  BI197_RS13655 abrB 2848273..2848563 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  BI197_RS13660 rsmI 2848613..2849494 (-) 882 WP_025854083.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  BI197_RS13665 - 2849469..2849768 (-) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  BI197_RS13670 - 2849755..2850498 (-) 744 WP_029974652.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  BI197_RS13675 yabA 2850558..2850917 (-) 360 WP_004264720.1 replication initiation-control protein YabA -
  BI197_RS13680 ricT 2850932..2851759 (-) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  BI197_RS13685 holB 2851762..2852751 (-) 990 WP_029974650.1 DNA polymerase III subunit delta' -
  BI197_RS13690 - 2852763..2853203 (-) 441 WP_004264730.1 YaaR family protein -
  BI197_RS13695 darA 2853216..2853545 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=202469 BI197_RS13655 WP_169510469.1 2848273..2848563(+) (abrB) [Bacillus velezensis strain SYBC H47]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=202469 BI197_RS13655 WP_169510469.1 2848273..2848563(+) (abrB) [Bacillus velezensis strain SYBC H47]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment