Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   BI197_RS09965 Genome accession   NZ_CP017747
Coordinates   2111641..2112219 (-) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus velezensis strain SYBC H47     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2106641..2117219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BI197_RS09925 - 2106878..2107237 (+) 360 WP_012117241.1 hypothetical protein -
  BI197_RS09930 - 2107358..2107558 (+) 201 WP_003155162.1 DUF3311 domain-containing protein -
  BI197_RS09935 - 2107555..2109024 (+) 1470 WP_063174181.1 sodium:solute symporter family protein -
  BI197_RS09940 - 2109065..2109382 (+) 318 WP_003155166.1 YbjQ family protein -
  BI197_RS09945 - 2109415..2109684 (-) 270 WP_071392024.1 excalibur calcium-binding domain-containing protein -
  BI197_RS09950 - 2109880..2110590 (+) 711 WP_003155170.1 YrpD family protein -
  BI197_RS09955 - 2110729..2111100 (-) 372 WP_063174180.1 iron chaperone -
  BI197_RS09960 - 2111127..2111495 (-) 369 WP_063174179.1 iron chaperone -
  BI197_RS09965 comK 2111641..2112219 (-) 579 WP_003155179.1 competence protein ComK Regulator
  BI197_RS09970 - 2112535..2112768 (+) 234 WP_071392025.1 IDEAL domain-containing protein -
  BI197_RS09975 - 2112799..2113656 (-) 858 WP_063174178.1 SDR family oxidoreductase -
  BI197_RS09980 - 2113781..2115304 (+) 1524 WP_063174177.1 FAD-dependent oxidoreductase -
  BI197_RS20050 - 2115220..2115960 (+) 741 Protein_2016 protoglobin domain-containing protein -
  BI197_RS20055 - 2116204..2116719 (+) 516 WP_369719112.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=202456 BI197_RS09965 WP_003155179.1 2111641..2112219(-) (comK) [Bacillus velezensis strain SYBC H47]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=202456 BI197_RS09965 WP_003155179.1 2111641..2112219(-) (comK) [Bacillus velezensis strain SYBC H47]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATTGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCAGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterProScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823

Multiple sequence alignment