Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   BI197_RS08275 Genome accession   NZ_CP017747
Coordinates   1784757..1785221 (+) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain SYBC H47     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1779757..1790221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BI197_RS08250 - 1780267..1780815 (-) 549 WP_071391906.1 hypothetical protein -
  BI197_RS08255 fadH 1780926..1781690 (-) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  BI197_RS08260 - 1781834..1782697 (+) 864 WP_071391907.1 metallophosphoesterase -
  BI197_RS08265 - 1782772..1783266 (+) 495 WP_148661874.1 L,D-transpeptidase family protein -
  BI197_RS08270 - 1783342..1784634 (+) 1293 WP_071391909.1 MFS transporter -
  BI197_RS08275 kre 1784757..1785221 (+) 465 WP_003154622.1 YkyB family protein Regulator
  BI197_RS08280 cheV 1785264..1786175 (-) 912 WP_071391910.1 chemotaxis protein CheV -
  BI197_RS19580 - 1786364..1786525 (+) 162 WP_007409608.1 hypothetical protein -
  BI197_RS08285 - 1786726..1787945 (+) 1220 Protein_1660 aminotransferase A -
  BI197_RS08290 - 1787921..1789741 (-) 1821 WP_003154628.1 PAS domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=202445 BI197_RS08275 WP_003154622.1 1784757..1785221(+) (kre) [Bacillus velezensis strain SYBC H47]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=202445 BI197_RS08275 WP_003154622.1 1784757..1785221(+) (kre) [Bacillus velezensis strain SYBC H47]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment