Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   BI197_RS05050 Genome accession   NZ_CP017747
Coordinates   1006835..1007443 (-) Length   202 a.a.
NCBI ID   WP_012117837.1    Uniprot ID   A0AAP5V0D3
Organism   Bacillus velezensis strain SYBC H47     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1001835..1012443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BI197_RS05030 dnaD 1002071..1002769 (+) 699 WP_003153516.1 DNA replication protein DnaD -
  BI197_RS05035 nth 1002788..1003447 (+) 660 WP_007409486.1 endonuclease III -
  BI197_RS05040 - 1003444..1003935 (+) 492 WP_007409487.1 YpoC family protein -
  BI197_RS05045 - 1004013..1006796 (-) 2784 WP_071391704.1 transglycosylase domain-containing protein -
  BI197_RS05050 recU 1006835..1007443 (-) 609 WP_012117837.1 Holliday junction resolvase RecU Machinery gene
  BI197_RS05055 - 1007485..1008447 (+) 963 WP_032870042.1 DUF2515 domain-containing protein -
  BI197_RS05060 sspM 1008491..1008595 (-) 105 WP_003153525.1 acid-soluble spore protein SspM -
  BI197_RS05065 - 1008801..1009046 (+) 246 WP_007409491.1 DUF5446 family protein -
  BI197_RS05070 - 1009092..1009460 (+) 369 WP_007409492.1 YppE family protein -
  BI197_RS05075 - 1009499..1009681 (-) 183 WP_003153532.1 YppF family protein -
  BI197_RS05080 - 1009868..1010344 (+) 477 WP_071391705.1 YppG family protein -
  BI197_RS05085 - 1010374..1010787 (-) 414 WP_017418017.1 Hsp20/alpha crystallin family protein -
  BI197_RS05090 - 1010926..1011432 (+) 507 WP_012117833.1 PTS sugar transporter subunit IIA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23666.75 Da        Isoelectric Point: 9.5778

>NTDB_id=202437 BI197_RS05050 WP_012117837.1 1006835..1007443(-) (recU) [Bacillus velezensis strain SYBC H47]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=202437 BI197_RS05050 WP_012117837.1 1006835..1007443(-) (recU) [Bacillus velezensis strain SYBC H47]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCCACAACTGACTACAACGGCATTTATAAAGGGCGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGACAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAATGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.452

98.515

0.891

Multiple sequence alignment