Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   BI197_RS03515 Genome accession   NZ_CP017747
Coordinates   700319..701086 (+) Length   255 a.a.
NCBI ID   WP_071391600.1    Uniprot ID   -
Organism   Bacillus velezensis strain SYBC H47     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 695319..706086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BI197_RS03485 - 695602..697734 (+) 2133 WP_015387990.1 HD family phosphohydrolase -
  BI197_RS03490 ybeY 697735..698208 (+) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  BI197_RS03495 - 698189..698563 (+) 375 WP_003152974.1 diacylglycerol kinase family protein -
  BI197_RS03500 - 698687..699097 (+) 411 WP_003152976.1 cytidine deaminase -
  BI197_RS03505 era 699078..699983 (+) 906 WP_007408285.1 GTPase Era -
  BI197_RS03510 - 700139..700282 (+) 144 WP_007408286.1 YqzL family protein -
  BI197_RS03515 recO 700319..701086 (+) 768 WP_071391600.1 DNA repair protein RecO Machinery gene
  BI197_RS03520 glyQ 701388..702275 (+) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  BI197_RS03525 glyS 702268..704307 (+) 2040 WP_071391601.1 glycine--tRNA ligase subunit beta -
  BI197_RS03530 ccpN 704408..705046 (+) 639 WP_003152989.1 transcriptional regulator CcpN -
  BI197_RS03535 - 705072..705884 (+) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29273.87 Da        Isoelectric Point: 8.3139

>NTDB_id=202426 BI197_RS03515 WP_071391600.1 700319..701086(+) (recO) [Bacillus velezensis strain SYBC H47]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKHVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=202426 BI197_RS03515 WP_071391600.1 700319..701086(+) (recO) [Bacillus velezensis strain SYBC H47]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CGAAAAACGAAATTAAACATGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.02

100

0.89

Multiple sequence alignment