Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LBS_RS10375 Genome accession   NZ_CP022709
Coordinates   62830..63258 (+) Length   142 a.a.
NCBI ID   WP_154255254.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain WiKim0063     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 57830..68258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LBS_RS00425 (LBS_00425) - 59408..60496 (+) 1089 WP_035144637.1 MraY family glycosyltransferase -
  LBS_RS00430 (LBS_00430) - 60523..61188 (-) 666 WP_025016329.1 YigZ family protein -
  LBS_RS00435 (LBS_00435) comFA 61250..62587 (+) 1338 WP_052039239.1 DEAD/DEAH box helicase Machinery gene
  LBS_RS10375 comFC 62830..63258 (+) 429 WP_154255254.1 ComF family protein Machinery gene
  LBS_RS00445 (LBS_00445) raiA 63385..63930 (+) 546 WP_011374202.1 ribosome-associated translation inhibitor RaiA -
  LBS_RS00450 (LBS_00450) secA 64179..66542 (+) 2364 WP_011374203.1 preprotein translocase subunit SecA -
  LBS_RS00455 (LBS_00455) prfB 66612..67728 (+) 1117 WP_099049013.1 peptide chain release factor 2 -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16678.13 Da        Isoelectric Point: 10.0721

>NTDB_id=202363 LBS_RS10375 WP_154255254.1 62830..63258(+) (comFC) [Latilactobacillus sakei strain WiKim0063]
MQLYFQRYKGQGDYQLRLLFERDIRTRFPVKSNVTYVPIPSDEQHQQERGFNPVQGLFETCFPLTSLLKKRPTEKGQAQK
NRAERLASSQFFELIPQELPHKPQSIIILDDIYTTGRTVWHAQQCLRARYPQIAINAITLAR

Nucleotide


Download         Length: 429 bp        

>NTDB_id=202363 LBS_RS10375 WP_154255254.1 62830..63258(+) (comFC) [Latilactobacillus sakei strain WiKim0063]
ATGCAGTTATATTTTCAACGTTATAAGGGCCAAGGAGACTATCAATTACGGCTATTATTCGAACGCGACATTCGAACTCG
GTTTCCAGTAAAATCCAATGTAACTTACGTGCCTATTCCATCTGATGAGCAACATCAACAAGAACGGGGCTTTAATCCAG
TCCAAGGCTTATTCGAAACTTGTTTTCCGTTAACATCGCTATTGAAAAAGCGGCCAACAGAGAAGGGCCAAGCACAAAAA
AATCGTGCAGAACGTCTTGCAAGTTCACAATTTTTTGAATTAATACCGCAAGAATTACCGCATAAGCCACAATCGATAAT
AATCTTGGATGATATTTATACGACGGGCCGAACGGTGTGGCATGCACAACAATGTCTGCGTGCTCGGTATCCACAAATTG
CAATTAATGCGATTACTTTAGCCAGATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Latilactobacillus sakei subsp. sakei 23K

95.775

100

0.958
  comFC Lactococcus lactis subsp. cremoris KW2

38.028

100

0.38

Multiple sequence alignment