Detailed information    

insolico Bioinformatically predicted

Overview

Name   helD   Type   Machinery gene
Locus tag   LBS_RS09370 Genome accession   NZ_CP022709
Coordinates   1864598..1866895 (-) Length   765 a.a.
NCBI ID   WP_016264609.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain WiKim0063     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1859598..1871895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LBS_RS09340 (LBS_09340) - 1860328..1860681 (+) 354 WP_016264604.1 PqqD family protein -
  LBS_RS09345 (LBS_09345) - 1860739..1862160 (+) 1422 WP_016264605.1 C69 family dipeptidase -
  LBS_RS09350 (LBS_09350) - 1862235..1863086 (+) 852 WP_016264606.1 YitT family protein -
  LBS_RS09355 (LBS_09355) - 1863136..1863351 (-) 216 WP_016264607.1 DUF2187 family protein -
  LBS_RS09360 (LBS_09360) - 1863548..1864390 (+) 843 WP_016264608.1 HAD family hydrolase -
  LBS_RS09370 (LBS_09370) helD 1864598..1866895 (-) 2298 WP_016264609.1 RNA polymerase recycling motor HelD Machinery gene
  LBS_RS09375 (LBS_09375) trpS 1867252..1868268 (+) 1017 WP_025016433.1 tryptophan--tRNA ligase -
  LBS_RS09380 (LBS_09380) - 1868422..1869789 (+) 1368 WP_016264611.1 MATE family efflux transporter -
  LBS_RS09385 (LBS_09385) - 1869782..1870579 (+) 798 WP_094365888.1 DNA/RNA non-specific endonuclease -
  LBS_RS09390 (LBS_09390) - 1870645..1871280 (+) 636 WP_226474418.1 pentapeptide repeat-containing protein -

Sequence

Protein


Download         Length: 765 a.a.        Molecular weight: 86994.20 Da        Isoelectric Point: 4.6063

>NTDB_id=202355 LBS_RS09370 WP_016264609.1 1864598..1866895(-) (helD) [Latilactobacillus sakei strain WiKim0063]
MLQEETQQQEQARVDLTVDQVNQRLTVINQQLDNAYNETKDIEQRYGDTTKVNITEVDDRMETNAAVQQQKQLVAAAVEN
EKLLTTQQKRLTDLVDSPYFGRIDINEDGEEESLYIGTATFINEQDQFLVYDWRAPIASIYYNGTLGTVSYDTPNGPVKV
DLTLKRQFKIKNGQIEHLFDTNETVGDELLQAVLGQQSDEYMQNIVATIQKEQNDIIRDTTADLLIVQGVAGSGKTSAVL
QRIAFLLYHSRSNLEADQMVLFSPNRLFSHYISDVLPSLGEKNMRQVTMAEFLSHRFSGLQVETLFDRFEKDQASFPEMT
QAMRRFKESAPFMQQIAAYVKQVSTQPLAFNDLYFEDRPFFTKAQINKIYLDLPHNMRPGDKFIATKNTLIKRLKRQINL
EVHLDWVAEKIDTLSDDDYRAIVGDREFDSGDLEQAFIAREIVQNYFADLYDAIYNDYFLDVYTEYQNFLRTACPETIPS
AVWAAMIETVAQNNERHLVGLSDAAPILYLRDLLTDSGQNHSIQYLFIDEMQDYSIAQFVYLQHAFPNAKFTILGDYAQD
VFTATYQAGNFIERLCAAFPKLKTNQISLTKSYRATAPITNFAKALLPKETALQAFSRDGRLPRVITATKAASLNALTQE
IFHLQKRHATIAILTKDQQTARQLFASLTPDDQVTLISETTRSLPKGVLVLPLYLAKGLEFDAVIGYDISATTFGQASDV
DLLYTLMTRAMHDLTLLGIDTLSPLIADLDHQYYQNVTTTKETIA

Nucleotide


Download         Length: 2298 bp        

>NTDB_id=202355 LBS_RS09370 WP_016264609.1 1864598..1866895(-) (helD) [Latilactobacillus sakei strain WiKim0063]
ATGCTACAAGAAGAAACGCAACAACAAGAACAAGCTCGTGTTGATTTAACGGTTGACCAAGTCAATCAACGGCTAACGGT
TATCAACCAACAATTGGACAACGCCTATAATGAAACTAAAGATATTGAGCAACGTTACGGTGATACTACCAAGGTTAACA
TTACCGAAGTTGATGACCGGATGGAAACCAATGCCGCTGTCCAACAGCAAAAGCAACTGGTCGCAGCTGCCGTTGAAAAC
GAGAAACTCCTAACGACACAACAAAAACGACTAACGGATTTAGTTGACTCCCCCTATTTTGGTCGGATTGATATCAATGA
AGACGGTGAAGAAGAATCACTCTACATCGGAACCGCCACTTTTATCAACGAACAAGACCAATTTTTAGTTTATGATTGGC
GAGCACCCATCGCTAGTATCTATTATAATGGCACACTGGGAACCGTCAGTTACGATACGCCCAACGGCCCCGTTAAAGTT
GACTTAACTTTAAAACGGCAGTTCAAGATTAAAAACGGTCAGATTGAACACCTCTTTGATACAAACGAAACGGTTGGTGA
CGAACTCCTGCAAGCCGTCCTCGGCCAACAAAGCGACGAATATATGCAAAATATTGTCGCAACAATTCAAAAAGAACAAA
ACGATATTATTCGTGATACGACTGCCGATTTACTAATCGTTCAAGGCGTCGCCGGTAGTGGTAAGACTTCTGCGGTTTTA
CAACGGATTGCCTTCTTACTCTATCACAGTCGTAGCAACTTAGAAGCCGACCAGATGGTTCTTTTTTCACCTAACCGTTT
ATTCAGCCATTACATTTCTGACGTTCTCCCCAGCTTAGGCGAGAAAAACATGCGCCAAGTGACAATGGCTGAGTTTTTAA
GCCACCGTTTCTCGGGACTCCAAGTTGAAACACTCTTCGACCGCTTTGAAAAAGATCAAGCAAGTTTCCCAGAAATGACC
CAAGCAATGCGTCGCTTTAAGGAAAGTGCGCCCTTTATGCAACAAATTGCGGCCTACGTTAAACAGGTTTCTACACAACC
GCTTGCCTTCAATGACCTCTACTTTGAAGATCGGCCTTTCTTCACAAAAGCGCAAATCAATAAAATCTATCTCGACCTTC
CACATAACATGCGTCCTGGTGATAAATTTATTGCTACTAAGAACACCTTAATTAAGCGGCTCAAACGCCAGATCAATTTA
GAAGTGCACCTTGATTGGGTCGCTGAAAAAATTGATACCTTATCCGATGATGACTACCGCGCCATTGTCGGTGATCGCGA
ATTTGATTCCGGCGATTTAGAGCAAGCTTTTATTGCCCGGGAAATTGTTCAAAATTATTTTGCTGATTTATACGATGCTA
TTTATAACGATTACTTCTTGGATGTGTATACTGAATATCAAAACTTCTTACGAACAGCCTGTCCTGAGACAATCCCGTCC
GCCGTTTGGGCTGCAATGATTGAAACAGTTGCCCAAAATAATGAACGCCATCTCGTTGGTTTGAGTGACGCAGCCCCTAT
TTTATATCTTCGTGACTTATTAACCGATAGTGGTCAAAATCACAGTATTCAGTACTTATTCATCGATGAAATGCAAGATT
ATAGCATTGCGCAATTTGTCTATCTCCAGCATGCTTTTCCCAACGCTAAATTCACGATTCTTGGCGATTACGCACAAGAT
GTTTTTACCGCTACTTACCAAGCCGGTAATTTCATCGAGCGCCTCTGTGCGGCTTTTCCAAAACTAAAAACTAACCAAAT
CAGTTTGACGAAGAGTTATCGCGCGACTGCCCCAATCACGAATTTTGCAAAGGCCCTACTGCCTAAAGAAACAGCCTTGC
AGGCCTTTAGTCGTGACGGTCGGCTTCCCCGCGTTATCACGGCCACCAAAGCTGCTAGTTTAAATGCCTTGACGCAGGAA
ATTTTCCACCTGCAAAAGCGGCATGCAACCATCGCCATTTTAACCAAGGATCAACAAACAGCGCGCCAACTTTTCGCCAG
CCTCACCCCCGATGATCAGGTAACGCTCATCTCCGAGACCACCCGCTCATTGCCAAAAGGCGTCTTGGTATTACCGCTAT
ACCTCGCTAAAGGGCTTGAATTCGATGCCGTCATTGGCTACGATATTTCAGCAACAACCTTCGGCCAAGCAAGCGACGTT
GACTTACTCTATACATTGATGACGCGTGCAATGCATGACTTAACTTTGTTAGGGATTGACACCCTCAGCCCGCTAATTGC
TGATTTAGATCATCAATACTATCAGAACGTTACAACAACCAAGGAAACGATTGCCTAA

Domains

Predicted by InterProScan.

AAA domain (AAA_19)

(213-562)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(689-736)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  helD Bacillus subtilis subsp. subtilis str. 168

36.481

100

0.369

Multiple sequence alignment