Detailed information    

insolico Bioinformatically predicted

Overview

Name   helD   Type   Machinery gene
Locus tag   LBS_RS08305 Genome accession   NZ_CP022709
Coordinates   1620417..1622708 (+) Length   763 a.a.
NCBI ID   WP_035146054.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain WiKim0063     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1615417..1627708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LBS_RS08280 (LBS_08280) - 1615789..1616247 (+) 459 WP_011373843.1 MarR family transcriptional regulator -
  LBS_RS08285 (LBS_08285) - 1616621..1617523 (-) 903 WP_011373844.1 proline-specific peptidase family protein -
  LBS_RS08290 (LBS_08290) - 1617597..1619435 (-) 1839 WP_011373845.1 cation:proton antiporter family protein -
  LBS_RS08295 (LBS_08295) crcB 1619572..1619979 (+) 408 WP_035146059.1 fluoride efflux transporter CrcB -
  LBS_RS08300 (LBS_08300) - 1619976..1620323 (+) 348 WP_035146056.1 CrcB family protein -
  LBS_RS08305 (LBS_08305) helD 1620417..1622708 (+) 2292 WP_035146054.1 RNA polymerase recycling motor HelD Machinery gene
  LBS_RS08310 (LBS_08310) coaA 1622816..1623745 (+) 930 WP_016264412.1 type I pantothenate kinase -
  LBS_RS08315 (LBS_08315) guaA 1623912..1625465 (+) 1554 WP_011373850.1 glutamine-hydrolyzing GMP synthase -
  LBS_RS08320 (LBS_08320) - 1625604..1626971 (+) 1368 WP_035146051.1 hypothetical protein -

Sequence

Protein


Download         Length: 763 a.a.        Molecular weight: 87728.78 Da        Isoelectric Point: 6.6832

>NTDB_id=202348 LBS_RS08305 WP_035146054.1 1620417..1622708(+) (helD) [Latilactobacillus sakei strain WiKim0063]
MTDVQKSLEQSRLTEIIGLIKKAETHFEGAVKRAKSEEKEINENFFNDVRLNFNNDSAMTETAVSIEQQRQMLQERNHSW
QQSSRQLETLQKMEKTPYFARVDFQEKGEPKSESIYIGLGSFTDTDDHFLIYDWRAPISSIYYEGKTGAVTYQTPDGPQD
VNISLKRQFLIEDGQIKALFDTQETIGDQMLLEVLGEKSDTQMKSIVTTIQREQNQIIRNTDADLLFVQGAAGSGKTSAI
LQRIAFLLYRYRGNLDSSQVIMFSPNQLFNDYIADVLPELGEQNMIQMTYFQYVARRLPNMGVQSLFDQFETPVNETDGR
ISRLKESLVFYKAVKKYAAHLEKADMRFRDMKVKGRVLITKEHISEVYYRFNENYHLGNRLDATKESLLRTLSHKVDHET
KADWVTEQAENMSDEEIRELMSGKDFKTGDAESKFIAKQIVLEAFKPVRRSIQRNRFLSIQAQYIHFLRVVPQLVKLADF
DITEEQWQDHVTHFVAQLKAKQMTLQDVTPYLHLYDLMTGKKGERDMRFVFIDEIQDYTPYELAFLKLHFPKARFTLLGD
LNQAIFTKGNSTNLLQQVQQLFDAQNTKVVQLTRSYRSTQQVTDFTKGLLKGGQAIEAFNRVGDKPNLIVRQSEAELVAD
VNRQLAANEADKLSTAIITKTLVQAQELTKMLKKTGTKVTLIRSENQRLAAGTLVVPSFLAKGLEFDAIIGWQISAANYN
HEDQRQLLYTICSRAMHRLTLLATDALSPLIDNVDPEKYTLTK

Nucleotide


Download         Length: 2292 bp        

>NTDB_id=202348 LBS_RS08305 WP_035146054.1 1620417..1622708(+) (helD) [Latilactobacillus sakei strain WiKim0063]
TTGACTGACGTACAGAAATCATTGGAACAAAGCCGATTAACAGAAATTATTGGTTTAATTAAAAAAGCTGAGACCCATTT
TGAAGGGGCTGTTAAGCGCGCAAAATCGGAAGAAAAAGAAATTAACGAGAACTTCTTCAACGATGTTCGCCTTAACTTCA
ACAACGATTCCGCGATGACTGAAACCGCCGTTTCGATTGAACAGCAGCGGCAAATGCTACAAGAACGCAATCACTCGTGG
CAACAATCTTCACGGCAATTGGAAACCTTGCAAAAGATGGAAAAGACGCCATACTTTGCCCGTGTTGATTTTCAAGAAAA
GGGTGAACCTAAATCCGAATCAATTTATATCGGGTTAGGCTCATTTACAGATACCGACGATCATTTCTTAATTTATGATT
GGCGGGCACCAATTTCATCAATTTACTATGAAGGTAAGACGGGTGCGGTGACGTACCAAACACCAGACGGCCCGCAAGAT
GTGAATATCTCACTTAAACGCCAATTCTTAATTGAAGATGGCCAAATCAAGGCCTTATTTGATACGCAAGAAACGATTGG
CGATCAAATGTTATTAGAAGTGTTAGGTGAAAAATCCGATACGCAGATGAAGAGTATCGTCACGACGATTCAACGTGAAC
AAAATCAGATTATCCGTAATACCGATGCTGATTTGTTATTCGTTCAAGGGGCAGCTGGCTCAGGGAAAACATCAGCTATC
TTGCAACGCATTGCGTTTTTACTCTATCGCTATCGGGGGAATTTAGATTCGAGTCAAGTGATCATGTTCTCGCCTAACCA
ATTATTCAACGACTACATCGCAGATGTGTTGCCTGAATTGGGCGAACAAAATATGATTCAAATGACTTACTTCCAATATG
TGGCACGCCGGTTACCAAACATGGGGGTCCAGAGCCTTTTTGACCAATTCGAAACACCGGTTAACGAAACCGATGGCCGG
ATTAGTCGCTTGAAAGAAAGTCTCGTCTTTTATAAGGCTGTTAAAAAATACGCTGCGCATCTTGAAAAAGCCGACATGCG
CTTCCGCGATATGAAGGTCAAGGGCCGCGTCTTGATTACGAAGGAACACATCAGCGAGGTTTATTACCGGTTTAATGAAA
ACTACCATCTCGGCAATCGATTAGATGCGACTAAAGAAAGTTTGTTGCGGACATTGAGCCACAAGGTTGATCACGAAACC
AAGGCTGACTGGGTGACTGAGCAAGCCGAGAATATGAGTGATGAAGAAATTCGCGAGTTGATGTCTGGTAAAGATTTCAA
GACGGGTGACGCTGAAAGCAAGTTTATCGCTAAGCAAATCGTGCTAGAGGCCTTCAAACCCGTTCGCCGGTCTATTCAAC
GCAATCGCTTCTTAAGCATCCAGGCGCAATATATTCACTTCTTACGGGTTGTGCCACAACTTGTGAAGTTAGCCGATTTT
GATATTACAGAAGAGCAATGGCAAGACCACGTCACGCATTTTGTCGCACAATTGAAGGCTAAGCAGATGACGTTGCAAGA
TGTCACACCTTATCTTCACCTCTACGATTTGATGACGGGTAAAAAAGGCGAACGTGATATGCGTTTTGTCTTCATCGATG
AAATTCAAGATTACACGCCTTATGAATTGGCCTTCTTGAAGCTCCACTTCCCTAAGGCGCGCTTCACATTATTGGGCGAT
TTGAACCAAGCGATTTTCACTAAAGGCAACAGCACAAATCTCTTGCAACAAGTGCAACAATTATTTGATGCCCAAAATAC
AAAAGTGGTGCAATTAACGCGTTCATACCGGTCAACGCAACAAGTGACCGACTTTACCAAGGGCTTATTAAAAGGTGGCC
AAGCCATCGAAGCCTTCAACCGCGTTGGCGATAAACCAAACTTGATTGTGCGCCAATCAGAAGCTGAGTTAGTGGCTGAT
GTTAACCGCCAATTAGCCGCAAATGAAGCGGATAAATTATCGACGGCGATTATTACCAAGACATTGGTGCAAGCCCAAGA
ATTGACGAAGATGCTCAAGAAAACGGGAACCAAAGTCACCTTGATTCGTTCCGAAAACCAACGTTTAGCAGCCGGGACAT
TAGTGGTCCCAAGTTTCTTAGCTAAAGGTTTGGAATTCGATGCCATTATTGGCTGGCAAATCAGTGCCGCCAACTACAAT
CATGAAGATCAACGGCAATTGCTCTACACGATTTGTTCAAGAGCAATGCATCGCTTGACCTTGTTAGCCACTGACGCACT
CTCACCACTGATTGATAACGTCGATCCAGAAAAATATACATTAACAAAATAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(700-741)

AAA domain (AAA_19)

(214-566)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  helD Bacillus subtilis subsp. subtilis str. 168

38.243

100

0.388