Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   LBS_RS08065 Genome accession   NZ_CP022709
Coordinates   1568188..1568994 (+) Length   268 a.a.
NCBI ID   WP_016264363.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain WiKim0063     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1563188..1573994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LBS_RS08045 (LBS_08045) yycF 1563385..1564098 (+) 714 WP_011373790.1 response regulator YycF -
  LBS_RS08050 (LBS_08050) walK 1564108..1566006 (+) 1899 WP_011373791.1 cell wall metabolism sensor histidine kinase WalK -
  LBS_RS08055 (LBS_08055) yycH 1565996..1567327 (+) 1332 WP_035147594.1 two-component system activity regulator YycH -
  LBS_RS08060 (LBS_08060) - 1567332..1568153 (+) 822 WP_035147596.1 two-component system regulatory protein YycI -
  LBS_RS08065 (LBS_08065) vicX 1568188..1568994 (+) 807 WP_016264363.1 MBL fold metallo-hydrolase Regulator
  LBS_RS08070 (LBS_08070) htrA 1569128..1570387 (+) 1260 WP_025016471.1 trypsin-like peptidase domain-containing protein Regulator
  LBS_RS08075 (LBS_08075) rlmH 1570932..1571411 (+) 480 WP_011373797.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  LBS_RS08080 (LBS_08080) - 1571551..1572210 (+) 660 WP_025016470.1 hypothetical protein -
  LBS_RS08085 (LBS_08085) add 1572267..1573292 (-) 1026 WP_035147601.1 adenosine deaminase -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 29695.31 Da        Isoelectric Point: 5.0059

>NTDB_id=202346 LBS_RS08065 WP_016264363.1 1568188..1568994(+) (vicX) [Latilactobacillus sakei strain WiKim0063]
MVEKDEMRVSVLASSSSGNTTFIETPTQKILVDAGMSGKRVQDLMHSIGRDLKDVDSLLVTHEHRDHSSGVGVLARRYGI
DVYANQPTWDAMASIIGTVPDEHKHVFEMGKTKTLGDIDVESYGVSHDAAAAQFYQFHHNNRAFAILTDTGYVSDQIRGT
IENADAYLVECNHDLEMLRMGKYPWSLKQRILSDTGHLSNEDGASALMAFMGQQTKRVFLGHLSQENNMKELAHLTVASI
LEQHDYGVGTDFEILDTDPAIADPLFVV

Nucleotide


Download         Length: 807 bp        

>NTDB_id=202346 LBS_RS08065 WP_016264363.1 1568188..1568994(+) (vicX) [Latilactobacillus sakei strain WiKim0063]
ATGGTAGAAAAAGATGAAATGCGGGTTAGCGTCTTAGCCAGCAGTAGTTCAGGCAACACAACTTTTATTGAAACACCAAC
TCAAAAAATATTAGTCGACGCGGGAATGAGCGGTAAACGCGTTCAGGATTTAATGCACAGTATCGGTCGGGATTTAAAGG
ATGTTGACAGTCTACTAGTGACGCACGAACATCGCGATCACAGTAGTGGCGTGGGTGTTTTAGCCCGCCGGTATGGGATT
GATGTGTATGCTAACCAACCGACTTGGGATGCGATGGCGTCAATTATTGGGACCGTTCCTGATGAACATAAGCACGTCTT
TGAGATGGGTAAAACCAAAACACTCGGTGATATCGATGTTGAAAGTTATGGCGTTTCACACGATGCCGCTGCGGCGCAAT
TCTATCAATTTCATCATAATAACCGAGCCTTCGCAATCTTAACGGATACGGGTTACGTTTCGGATCAAATCAGAGGCACT
ATCGAAAATGCGGATGCCTACTTGGTGGAATGTAATCACGATTTGGAAATGTTACGAATGGGTAAGTACCCTTGGTCGCT
TAAACAACGTATTCTTAGTGATACGGGTCATCTATCTAACGAAGATGGGGCTTCAGCCTTAATGGCCTTTATGGGACAAC
AAACAAAGCGTGTTTTCCTAGGTCATTTGAGCCAAGAAAACAATATGAAGGAGTTGGCACACTTAACGGTGGCATCAATT
TTAGAACAACATGATTACGGTGTTGGCACGGATTTTGAAATTTTGGATACTGATCCAGCGATTGCGGACCCTTTATTTGT
TGTTTAG

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(17-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

59.459

96.642

0.575