Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   LBS_RS07790 Genome accession   NZ_CP022709
Coordinates   1516487..1517362 (+) Length   291 a.a.
NCBI ID   WP_016264319.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain WiKim0063     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1511487..1522362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LBS_RS07770 (LBS_07770) - 1512370..1513677 (-) 1308 WP_099735356.1 nucleobase:cation symporter-2 family protein -
  LBS_RS07775 (LBS_07775) rsmG 1514079..1514819 (+) 741 WP_011373731.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  LBS_RS07780 (LBS_07780) noc 1514819..1515718 (+) 900 WP_016264317.1 nucleoid occlusion protein -
  LBS_RS07785 (LBS_07785) - 1515730..1516497 (+) 768 WP_016264318.1 AAA family ATPase -
  LBS_RS07790 (LBS_07790) spo0J 1516487..1517362 (+) 876 WP_016264319.1 ParB/RepB/Spo0J family partition protein Regulator
  LBS_RS07795 (LBS_07795) - 1517381..1517629 (+) 249 WP_016264320.1 DUF951 domain-containing protein -
  LBS_RS07800 (LBS_07800) ychF 1517653..1518753 (+) 1101 WP_011373736.1 redox-regulated ATPase YchF -
  LBS_RS07805 (LBS_07805) - 1518771..1519445 (+) 675 WP_016264321.1 DUF1129 domain-containing protein -
  LBS_RS07810 (LBS_07810) - 1519482..1520246 (+) 765 WP_035145482.1 prolyl oligopeptidase family serine peptidase -
  LBS_RS07815 (LBS_07815) - 1520627..1521295 (+) 669 WP_016264323.1 HAD hydrolase-like protein -
  LBS_RS07820 (LBS_07820) nrdI 1521292..1521759 (-) 468 WP_016264324.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32411.38 Da        Isoelectric Point: 9.8304

>NTDB_id=202344 LBS_RS07790 WP_016264319.1 1516487..1517362(+) (spo0J) [Latilactobacillus sakei strain WiKim0063]
MVNKNGKGLGRGLEAVFSAFEGPNKNRADELVEEIALEDIRPNPYQPRKTFDEAALAELAASIKKSGVFQPIIVRKSING
YELIAGERRFRASKLAGKTTIPAITRQFDEEAMMEIAVLENLQREDLTPLEEAQAYDTLLKKLNLTQAEVSERLGKSRPY
IANYLRLLGLPADVKQLLQEGQLSMGQARTLLSLKKKSQISALAKRTIAESLTVRQLEQLVNQMNQTKAAKVAKTKIKSP
YIQASENQLVDKFDTKVNIAMNSKGRGKIEIDYGTVEDLNRILALLDVNID

Nucleotide


Download         Length: 876 bp        

>NTDB_id=202344 LBS_RS07790 WP_016264319.1 1516487..1517362(+) (spo0J) [Latilactobacillus sakei strain WiKim0063]
ATGGTCAATAAAAATGGTAAAGGACTCGGTCGAGGACTCGAAGCTGTTTTTTCAGCATTTGAAGGACCCAATAAGAATCG
TGCGGATGAACTCGTTGAAGAGATTGCCCTCGAGGATATTCGTCCTAATCCTTATCAACCACGTAAAACGTTTGATGAAG
CGGCACTAGCGGAACTTGCTGCTTCCATTAAAAAATCAGGCGTTTTCCAACCGATTATTGTGCGTAAAAGCATTAATGGT
TACGAATTAATCGCTGGCGAACGTCGTTTCCGTGCTTCTAAATTAGCTGGCAAAACTACGATTCCAGCGATTACCCGTCA
ATTCGATGAAGAAGCGATGATGGAAATTGCAGTCTTGGAAAATCTTCAACGGGAAGATTTAACACCGCTAGAAGAAGCGC
AAGCCTACGACACCCTTTTGAAGAAGTTAAACTTAACGCAAGCTGAAGTGTCAGAACGCTTAGGCAAGAGTCGCCCTTAC
ATTGCCAATTACTTACGCCTGTTGGGCTTGCCAGCAGATGTTAAGCAATTGTTGCAAGAAGGCCAACTCTCAATGGGACA
AGCACGGACGCTTTTATCATTGAAGAAAAAGAGTCAAATTAGCGCCCTCGCCAAGCGGACGATTGCCGAAAGTTTAACGG
TGCGCCAATTAGAACAACTCGTCAACCAAATGAATCAAACCAAAGCGGCTAAAGTCGCTAAGACTAAGATTAAATCACCT
TACATTCAAGCGAGTGAAAACCAATTAGTTGATAAATTCGATACCAAGGTTAATATTGCGATGAACAGTAAGGGCCGGGG
GAAAATCGAAATTGATTACGGCACGGTAGAGGATTTAAACCGAATCTTGGCTTTACTAGATGTCAATATTGATTAG

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(139-166)

HTH domain found in ParB protein (HTH_ParB)

(173-223)

ParB/Sulfiredoxin domain (ParB_N)

(33-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

42.629

86.254

0.368