Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   LBS_RS05555 Genome accession   NZ_CP022709
Coordinates   1061436..1062242 (-) Length   268 a.a.
NCBI ID   WP_025016070.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain WiKim0063     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1056436..1067242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LBS_RS05530 (LBS_05530) - 1056832..1057263 (+) 432 WP_025016066.1 GNAT family N-acetyltransferase -
  LBS_RS05535 (LBS_05535) - 1057339..1057812 (+) 474 WP_025016067.1 hypothetical protein -
  LBS_RS05540 (LBS_05540) - 1057954..1059654 (+) 1701 WP_229295523.1 glycosyltransferase family 8 protein -
  LBS_RS05545 (LBS_05545) - 1059723..1060259 (-) 537 WP_011375166.1 DUF402 domain-containing protein -
  LBS_RS05550 (LBS_05550) mutY 1060346..1061449 (-) 1104 WP_056936431.1 A/G-specific adenine glycosylase -
  LBS_RS05555 (LBS_05555) recX 1061436..1062242 (-) 807 WP_025016070.1 recombination regulator RecX Regulator
  LBS_RS05560 (LBS_05560) - 1062244..1062423 (-) 180 WP_011375169.1 hypothetical protein -
  LBS_RS05565 (LBS_05565) rlmD 1062811..1064202 (+) 1392 WP_011375170.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  LBS_RS05570 (LBS_05570) - 1064418..1064924 (-) 507 WP_011375171.1 DUF805 domain-containing protein -
  LBS_RS05575 (LBS_05575) - 1065015..1065485 (+) 471 WP_076645410.1 nucleoside 2-deoxyribosyltransferase -
  LBS_RS05580 (LBS_05580) - 1065572..1065814 (+) 243 WP_025016072.1 hypothetical protein -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31043.96 Da        Isoelectric Point: 6.2613

>NTDB_id=202334 LBS_RS05555 WP_025016070.1 1061436..1062242(-) (recX) [Latilactobacillus sakei strain WiKim0063]
MPQITKITSQKQKGRYNIFIDEQFAFGVTESVLIKFRLAKGLEIDSSLQRDIQKEDDNAKAYQLALNYLSHQLRTEKELT
QHLRDHEITPEGIETSLTKLRELHYLDDQDYADSYVRTVINTSDKGPKVVRQKLIQKGVSANHIDQALTLYTDEEQVTVG
LATAQKLAKKYRHSSFFEQQQKIKQGLMQKGFGGDNLSRIIDELALEEDSDSEADALAALGEKKWRRYRLLEPRERRMKM
QQALYRKGFNIDAINRFIDDQEVSDDTE

Nucleotide


Download         Length: 807 bp        

>NTDB_id=202334 LBS_RS05555 WP_025016070.1 1061436..1062242(-) (recX) [Latilactobacillus sakei strain WiKim0063]
ATGCCACAGATTACTAAAATTACCTCACAAAAACAAAAAGGGCGCTATAACATTTTTATCGACGAGCAGTTTGCCTTTGG
GGTGACTGAAAGTGTCTTAATCAAGTTTCGGCTTGCAAAAGGGCTCGAAATCGATAGTAGCTTACAACGCGACATTCAAA
AAGAAGACGACAATGCCAAGGCCTATCAACTGGCCTTGAATTATTTAAGTCACCAATTACGAACGGAAAAAGAATTAACA
CAACACTTGCGTGATCATGAAATTACGCCAGAAGGCATTGAAACCAGTTTGACAAAATTACGCGAACTACATTATTTGGA
TGATCAGGATTACGCGGACAGTTATGTTAGAACGGTGATTAATACTTCAGATAAGGGGCCTAAAGTGGTTCGACAAAAAT
TGATTCAAAAAGGGGTTAGTGCTAATCATATCGATCAAGCGTTGACGCTATATACAGACGAAGAACAAGTGACAGTCGGC
TTAGCAACTGCCCAAAAGCTAGCGAAGAAGTACCGCCACAGTTCGTTCTTCGAACAACAACAAAAGATTAAACAGGGCTT
GATGCAAAAGGGCTTTGGTGGTGATAATTTAAGTCGGATTATTGACGAATTAGCGCTTGAAGAAGACAGTGATAGTGAAG
CAGATGCATTGGCAGCCCTTGGCGAGAAAAAATGGCGCCGTTATCGCCTATTAGAACCGCGCGAGCGGCGGATGAAGATG
CAACAAGCACTTTACCGGAAAGGATTTAATATTGATGCAATCAACCGTTTCATCGACGACCAAGAAGTATCAGATGACAC
TGAGTGA

Domains

Predicted by InterProScan.

RecX family (RecX_HTH2)

(83-203)

RecX family (RecX_HTH2)

(204-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

38.023

98.134

0.373