Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   LBS_RS03040 Genome accession   NZ_CP022709
Coordinates   553754..554812 (+) Length   352 a.a.
NCBI ID   WP_035145797.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain WiKim0063     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 548754..559812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LBS_RS03015 (LBS_03015) - 549049..549549 (-) 501 WP_025015782.1 DUF1836 domain-containing protein -
  LBS_RS03020 (LBS_03020) - 549710..550348 (+) 639 WP_061827014.1 hemolysin III family protein -
  LBS_RS03025 (LBS_03025) - 550377..551219 (+) 843 WP_061826996.1 DegV family protein -
  LBS_RS03030 (LBS_03030) - 551345..551926 (+) 582 WP_011374667.1 TetR/AcrR family transcriptional regulator -
  LBS_RS03035 (LBS_03035) - 551928..552935 (+) 1008 WP_035145795.1 NADP-dependent oxidoreductase -
  LBS_RS03040 (LBS_03040) xerS 553754..554812 (+) 1059 WP_035145797.1 tyrosine recombinase XerS Machinery gene
  LBS_RS03045 (LBS_03045) thiT 555026..555628 (+) 603 WP_025015779.1 energy-coupled thiamine transporter ThiT -
  LBS_RS03050 (LBS_03050) - 555668..557461 (-) 1794 WP_025015778.1 heavy metal translocating P-type ATPase -
  LBS_RS03055 (LBS_03055) - 557585..558508 (-) 924 WP_035145799.1 manganese-dependent inorganic pyrophosphatase -
  LBS_RS03060 (LBS_03060) - 558561..559526 (-) 966 WP_016265126.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 40747.68 Da        Isoelectric Point: 9.1623

>NTDB_id=202303 LBS_RS03040 WP_035145797.1 553754..554812(+) (xerS) [Latilactobacillus sakei strain WiKim0063]
MDQQRYLELCEQRLADLPDYVRKFYINRQANAYSSATLYQYLQEYVRFFSWLIDEQIVTVQTTKDIPLVALDKMKLEDIE
LYKIFLMNKRKVNNHKLSFQAVNRSINALNALWYFLTIEAEQADGEPYFYRNVMKKVKLLKSSETMATRSRHIGQKLLTG
DKKHDFIAFMQVDYPSALSNRQLASYTQNCERDIAICVLALTTGIRLSELAQANVSDLNLEQLTITVIRKGGQQDTVPIA
PWGLPYLQDYVQIRQQRYLAANERALFVTKYRGQAKRISNYAIEKLVAKYSEAFGVRLTPHKFRHTLATDLMSATHSETI
VATQLGQTTTQATHLYTHVVDDEQRSAMDKLE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=202303 LBS_RS03040 WP_035145797.1 553754..554812(+) (xerS) [Latilactobacillus sakei strain WiKim0063]
ATGGACCAACAACGTTATCTCGAACTATGTGAACAACGCTTGGCGGATCTTCCCGATTACGTCCGTAAATTTTATATTAA
TCGGCAAGCCAATGCATACTCCTCTGCAACGCTCTATCAATATCTCCAAGAATACGTCCGCTTCTTCTCCTGGTTAATTG
ACGAACAAATCGTTACTGTTCAAACGACTAAGGATATCCCTCTTGTTGCGCTTGATAAGATGAAATTAGAAGATATCGAA
CTCTATAAGATCTTTTTAATGAATAAACGAAAAGTAAATAATCACAAGCTCTCCTTTCAGGCTGTTAATCGCTCTATCAA
CGCTTTGAATGCGCTCTGGTACTTCCTGACGATTGAAGCCGAACAAGCCGATGGTGAGCCTTATTTCTACCGCAACGTCA
TGAAAAAAGTCAAACTGCTCAAATCATCCGAGACAATGGCCACTCGTTCCCGCCATATCGGTCAAAAGTTGCTCACCGGT
GATAAAAAACACGACTTCATTGCCTTTATGCAAGTCGACTATCCCAGTGCGCTATCTAATCGCCAACTCGCTTCTTATAC
GCAGAATTGTGAACGGGATATTGCGATTTGCGTATTGGCACTCACTACCGGCATTCGTCTTTCCGAACTCGCCCAAGCTA
ACGTTTCTGATTTAAACCTTGAACAACTAACAATTACGGTTATTCGCAAAGGCGGTCAACAAGATACCGTGCCGATCGCA
CCTTGGGGTTTACCTTATCTGCAAGATTACGTTCAAATCCGGCAACAACGCTATTTAGCCGCTAACGAACGGGCCTTATT
TGTCACAAAGTATCGCGGTCAAGCGAAGCGAATCAGTAACTATGCCATTGAAAAACTGGTAGCTAAGTACTCTGAAGCTT
TTGGCGTTCGACTAACGCCGCATAAATTCCGTCATACACTCGCAACCGATCTGATGTCAGCGACCCACAGCGAAACGATC
GTAGCGACCCAATTGGGCCAAACCACCACGCAGGCCACCCATTTGTATACGCACGTGGTTGATGACGAACAGCGCTCGGC
AATGGATAAGCTCGAATGA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(190-340)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

45.506

100

0.46