Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   RM34_RS28430 Genome accession   NZ_CP022689
Coordinates   5259315..5259791 (-) Length   158 a.a.
NCBI ID   WP_001186738.1    Uniprot ID   B7UP40
Organism   Escherichia coli strain CDC#03-98     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5254315..5264791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RM34_RS28385 (RM34_28385) ghrA 5255040..5255978 (-) 939 WP_000351284.1 glyoxylate/hydroxypyruvate reductase GhrA -
  RM34_RS28395 (RM34_28395) - 5256449..5257291 (-) 843 WP_001280481.1 DUF4942 domain-containing protein -
  RM34_RS28400 (RM34_28400) - 5257376..5257573 (-) 198 WP_000839282.1 DUF957 domain-containing protein -
  RM34_RS28405 (RM34_28405) - 5257585..5258076 (-) 492 WP_000976853.1 DUF5983 family protein -
  RM34_RS28410 (RM34_28410) - 5258073..5258447 (-) 375 WP_000854914.1 TA system toxin CbtA family protein -
  RM34_RS28415 (RM34_28415) - 5258494..5258868 (-) 375 WP_001280954.1 type IV toxin-antitoxin system YeeU family antitoxin -
  RM34_RS28425 (RM34_28425) - 5259031..5259252 (-) 222 WP_001220314.1 DUF987 domain-containing protein -
  RM34_RS28430 (RM34_28430) radC 5259315..5259791 (-) 477 WP_001186738.1 RadC family protein Machinery gene
  RM34_RS28435 (RM34_28435) - 5259807..5260292 (-) 486 WP_000214398.1 antirestriction protein -
  RM34_RS28440 (RM34_28440) - 5260383..5261201 (-) 819 WP_001234682.1 DUF932 domain-containing protein -
  RM34_RS28455 (RM34_28455) - 5261541..5262611 (-) 1071 WP_000102669.1 patatin-like phospholipase family protein -
  RM34_RS28460 (RM34_28460) - 5262608..5263513 (-) 906 WP_000203541.1 diguanylate cyclase regulator RdcB family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17673.28 Da        Isoelectric Point: 6.9242

>NTDB_id=202282 RM34_RS28430 WP_001186738.1 5259315..5259791(-) (radC) [Escherichia coli strain CDC#03-98]
MQQLSFLPGEMTPGERSLILRALQTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=202282 RM34_RS28430 WP_001186738.1 5259315..5259791(-) (radC) [Escherichia coli strain CDC#03-98]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGCAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGTACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7UP40

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment