Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   RM34_RS20800 Genome accession   NZ_CP022689
Coordinates   3966526..3967002 (-) Length   158 a.a.
NCBI ID   WP_001186192.1    Uniprot ID   A0A0H3JIA8
Organism   Escherichia coli strain CDC#03-98     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3961526..3972002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RM34_RS20755 (RM34_20755) sbmC 3962018..3962491 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  RM34_RS20760 (RM34_20760) yeeA 3962690..3963748 (+) 1059 WP_001202488.1 FUSC family protein -
  RM34_RS20765 (RM34_20765) tmaR 3963920..3964249 (+) 330 WP_000450409.1 DUF496 family protein -
  RM34_RS20770 (RM34_20770) - 3964350..3964532 (-) 183 WP_001016346.1 EutP/PduV family microcompartment system protein -
  RM34_RS20775 (RM34_20775) - 3964586..3964732 (+) 147 Protein_3689 transposase domain-containing protein -
  RM34_RS29555 - 3965021..3965101 (-) 81 Protein_3690 hypothetical protein -
  RM34_RS20780 (RM34_20780) yeeW 3965147..3965341 (-) 195 WP_000988600.1 DUF5983 family protein -
  RM34_RS20785 (RM34_20785) - 3965403..3965711 (-) 309 Protein_3692 TA system toxin CbtA family protein -
  RM34_RS20790 (RM34_20790) cbeA 3965800..3966168 (-) 369 WP_001285587.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  RM34_RS20795 (RM34_20795) yeeT 3966242..3966463 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  RM34_RS20800 (RM34_20800) radC 3966526..3967002 (-) 477 WP_001186192.1 RadC family protein Machinery gene
  RM34_RS20805 (RM34_20805) - 3967017..3967496 (-) 480 WP_000860079.1 antirestriction protein -
  RM34_RS20810 (RM34_20810) - 3967578..3968399 (-) 822 WP_001234544.1 DUF932 domain-containing protein -
  RM34_RS20820 (RM34_20820) - 3968620..3969030 (-) 411 WP_000846711.1 hypothetical protein -
  RM34_RS20825 (RM34_20825) - 3969046..3969729 (-) 684 WP_000775497.1 hypothetical protein -
  RM34_RS20830 (RM34_20830) - 3969865..3970935 (-) 1071 WP_000102658.1 patatin-like phospholipase family protein -
  RM34_RS20835 (RM34_20835) - 3970932..3971837 (-) 906 WP_000203545.1 diguanylate cyclase regulator RdcB family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=202270 RM34_RS20800 WP_001186192.1 3966526..3967002(-) (radC) [Escherichia coli strain CDC#03-98]
MQQISFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=202270 RM34_RS20800 WP_001186192.1 3966526..3967002(-) (radC) [Escherichia coli strain CDC#03-98]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3JIA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392