Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   SPG_1869 Genome accession   CP001015
Coordinates   1785254..1786291 (-) Length   345 a.a.
NCBI ID   ACF55538.1    Uniprot ID   -
Organism   Streptococcus pneumoniae G54     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1780254..1791291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPG_1864 - 1780993..1782324 (-) 1332 ACF55695.1 CBS domain membrane protein -
  SPG_1865 endA 1782615..1783439 (-) 825 ACF56291.1 DNA-entry nuclease Machinery gene
  SPG_1866 - 1783478..1783666 (-) 189 ACF56154.1 conserved domain protein -
  SPG_1867 murA2 1783659..1784942 (-) 1284 ACF56747.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SPG_1868 - 1784966..1785196 (-) 231 ACF55063.1 hypothetical protein -
  SPG_1869 sepM 1785254..1786291 (-) 1038 ACF55538.1 conserved hypothetical protein Regulator
  SPG_1870 coaD 1786275..1786763 (-) 489 ACF56021.1 phosphopantetheine adenylyltransferase -
  SPG_1871 - 1786753..1787292 (-) 540 ACF56491.1 type II DNA modification methyltransferase, putative -
  SPG_1872 asnA 1787357..1788349 (-) 993 ACF54819.1 aspartate--ammonia ligase -
  SPG_1873 - 1788462..1789145 (-) 684 ACF56302.1 conserved hypothetical protein -
  SPG_1874 - 1789201..1789461 (-) 261 ACF55230.1 rRNA/tRNA methylase -
  SPG_1875 - 1789548..1789940 (-) 393 ACF56663.1 rRNA/tRNA methylase -
  SPG_1876 - 1789974..1790252 (+) 279 ACF56164.1 acylphosphatase -
  SPG_1877 - 1790330..1791256 (+) 927 ACF55128.1 SpoIIIJ family protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37537.57 Da        Isoelectric Point: 5.0724

>NTDB_id=20227 SPG_1869 ACF55538.1 1785254..1786291(-) (sepM) [Streptococcus pneumoniae G54]
MKKKIRWPLYVIAALIVTFLAFVVPLPYYIEVPGGSEDIRQVLKVNDTEDKEAGAYQFVTVGVQHATLAHMIYAWLTPFT
DIRSAQETTGGSSDVEFMRINQFYMQTSQNMAKYQGLKTAGKDIELKYFGVYVLNVTDNSTFKGILNISDTVTAVNDQTF
DSSKDLIDYVSSQKLGDSVKVTYEEDGQTKSAEGKIITLENGKNGIGIGLIDRTEVISNVPISFSTAGIGGPSAGLMFSL
AIYTQIAHPDLRNGRIVAGTGTIDRDGNVGDIGGIDKKVVASARAGAAIFFAPDNPVSEEEQKAHPDAKNNYQTALEAAK
TIKTDMKIVPVKTLQDAIDYLKNNP

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=20227 SPG_1869 ACF55538.1 1785254..1786291(-) (sepM) [Streptococcus pneumoniae G54]
ATGAAAAAAAAGATTAGATGGCCCTTGTATGTCATTGCGGCCTTGATTGTGACCTTCTTGGCATTTGTGGTGCCTTTGCC
CTACTATATAGAGGTTCCAGGTGGTTCGGAAGATATTCGCCAAGTCCTTAAAGTAAATGACACAGAAGATAAGGAAGCTG
GTGCCTATCAATTCGTTACGGTTGGTGTTCAACATGCTACTTTAGCTCATATGATTTATGCTTGGTTGACACCTTTTACA
GATATTCGTAGTGCTCAGGAGACTACAGGTGGTTCTTCCGATGTTGAATTTATGCGAATCAATCAATTCTACATGCAAAC
ATCGCAAAATATGGCCAAGTATCAAGGACTAAAAACAGCTGGTAAGGATATCGAACTCAAGTACTTTGGAGTTTATGTTT
TGAATGTGACGGATAATTCAACCTTTAAAGGGATTCTCAATATCTCTGATACAGTCACAGCAGTCAATGATCAGACCTTT
GATAGTTCCAAAGACTTGATTGATTACGTCAGTTCTCAAAAATTAGGGGACTCCGTCAAGGTCACCTATGAAGAGGATGG
GCAAACCAAGTCTGCAGAAGGAAAGATTATCACCTTGGAAAATGGAAAAAATGGGATTGGAATCGGCTTGATTGATCGTA
CAGAGGTAATCAGCAATGTCCCAATTAGCTTTTCAACAGCTGGTATTGGCGGCCCAAGTGCTGGTCTCATGTTTAGTCTA
GCTATCTATACTCAAATAGCTCACCCAGATCTTCGTAATGGTCGTATTGTTGCCGGTACAGGTACCATTGACCGCGATGG
TAATGTGGGAGACATTGGAGGTATTGATAAGAAGGTTGTAGCTTCGGCTAGGGCAGGTGCTGCTATTTTCTTTGCTCCTG
ATAACCCTGTTAGCGAAGAAGAACAAAAGGCGCATCCGGACGCGAAAAACAACTACCAAACAGCCCTAGAAGCGGCTAAA
ACAATCAAGACGGATATGAAAATCGTGCCCGTTAAAACCCTACAAGATGCGATTGATTACTTGAAAAACAATCCCTAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(130-193)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(230-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

59.649

99.13

0.591

Multiple sequence alignment