Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   RM34_RS20745 Genome accession   NZ_CP022689
Coordinates   3959097..3960524 (-) Length   475 a.a.
NCBI ID   WP_000980540.1    Uniprot ID   A0A0H3JGG6
Organism   Escherichia coli strain CDC#03-98     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3954097..3965524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RM34_RS20720 (RM34_20720) yeeZ 3954152..3954976 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  RM34_RS20725 (RM34_20725) yeeY 3955022..3955951 (+) 930 WP_000803334.1 LysR substrate-binding domain-containing protein -
  RM34_RS29550 yoeI 3956166..3956228 (+) 63 WP_010723108.1 membrane protein YoeI -
  RM34_RS20730 (RM34_20730) plaP 3956218..3957576 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  RM34_RS20735 (RM34_20735) tsuA 3957755..3958813 (+) 1059 WP_000492327.1 thiosulfate utilization transporter TsuA/YeeE -
  RM34_RS20740 (RM34_20740) tsuB 3958827..3959054 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  RM34_RS20745 (RM34_20745) sbcB 3959097..3960524 (-) 1428 WP_000980540.1 exodeoxyribonuclease I Machinery gene
  RM34_RS20750 (RM34_20750) dacD 3960733..3961899 (+) 1167 WP_001303036.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  RM34_RS20755 (RM34_20755) sbmC 3962018..3962491 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  RM34_RS20760 (RM34_20760) yeeA 3962690..3963748 (+) 1059 WP_001202488.1 FUSC family protein -
  RM34_RS20765 (RM34_20765) tmaR 3963920..3964249 (+) 330 WP_000450409.1 DUF496 family protein -
  RM34_RS20770 (RM34_20770) - 3964350..3964532 (-) 183 WP_001016346.1 EutP/PduV family microcompartment system protein -
  RM34_RS20775 (RM34_20775) - 3964586..3964732 (+) 147 Protein_3689 transposase domain-containing protein -
  RM34_RS29555 - 3965021..3965101 (-) 81 Protein_3690 hypothetical protein -
  RM34_RS20780 (RM34_20780) yeeW 3965147..3965341 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54500.77 Da        Isoelectric Point: 5.3498

>NTDB_id=202269 RM34_RS20745 WP_000980540.1 3959097..3960524(-) (sbcB) [Escherichia coli strain CDC#03-98]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=202269 RM34_RS20745 WP_000980540.1 3959097..3960524(-) (sbcB) [Escherichia coli strain CDC#03-98]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGCTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAACCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
TATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTACATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3JGG6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581