Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   RM34_RS17155 Genome accession   NZ_CP022689
Coordinates   3226027..3226542 (+) Length   171 a.a.
NCBI ID   WP_001130215.1    Uniprot ID   B5Z2A2
Organism   Escherichia coli strain CDC#03-98     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3221027..3231542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RM34_RS17110 (RM34_17110) csrA 3221844..3222029 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  RM34_RS17140 (RM34_17140) yqaB 3223257..3223823 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  RM34_RS17145 (RM34_17145) yqaA 3223820..3224248 (+) 429 WP_001287450.1 YqaA family protein -
  RM34_RS17150 (RM34_17150) gshA 3224321..3225877 (+) 1557 WP_000611787.1 glutamate--cysteine ligase -
  RM34_RS17155 (RM34_17155) luxS 3226027..3226542 (+) 516 WP_001130215.1 S-ribosylhomocysteine lyase Regulator
  RM34_RS17160 (RM34_17160) emrB 3226606..3228144 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  RM34_RS17165 (RM34_17165) emrA 3228161..3229333 (-) 1173 WP_001302673.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  RM34_RS17170 (RM34_17170) emrR 3229460..3229990 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  RM34_RS17175 (RM34_17175) ygaH 3230081..3230416 (-) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  RM34_RS17180 (RM34_17180) ygaZ 3230406..3231143 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19444.24 Da        Isoelectric Point: 5.0362

>NTDB_id=202260 RM34_RS17155 WP_001130215.1 3226027..3226542(+) (luxS) [Escherichia coli strain CDC#03-98]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADVWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=202260 RM34_RS17155 WP_001130215.1 3226027..3226542(+) (luxS) [Escherichia coli strain CDC#03-98]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGTCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATTCCGGAGCTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B5Z2A2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.515

100

0.725