Detailed information NTG0202257

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: RM34_RS16890
• Genome accession: NZ_CP022689
• Coordinates: 3176839..3177831 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain CDC#03-98
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3171839..3182831

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RM34_RS16860 (RM34_16860)	ispD	3171900..3172610 (+)	711	WP_000246158.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
RM34_RS16865 (RM34_16865)	ispF	3172610..3173089 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
RM34_RS16870 (RM34_16870)	truD	3173086..3174135 (+)	1050	WP_000568934.1	tRNA pseudouridine(13) synthase TruD	-
RM34_RS16875 (RM34_16875)	surE	3174116..3174877 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
RM34_RS16880 (RM34_16880)	pcm	3174871..3175497 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
RM34_RS16885 (RM34_16885)	nlpD	3175682..3176776 (+)	1095	WP_306256364.1	murein hydrolase activator NlpD	-
RM34_RS16890 (RM34_16890)	rpoS	3176839..3177831 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
RM34_RS16895 (RM34_16895)	-	3177951..3178358 (-)	408	WP_000175365.1	MarR family transcriptional regulator	-
RM34_RS16900 (RM34_16900)	-	3178505..3179098 (+)	594	WP_000767724.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
RM34_RS16905 (RM34_16905)	-	3179098..3180525 (+)	1428	WP_000863205.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
RM34_RS16910 (RM34_16910)	-	3180536..3180772 (+)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
RM34_RS16915 (RM34_16915)	pphB	3180813..3181469 (-)	657	WP_001141350.1	protein-serine/threonine phosphatase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=202257 RM34_RS16890 WP_000081550.1 3176839..3177831(+) (rpoS) [Escherichia coli strain CDC#03-98]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=202257 RM34_RS16890 WP_000081550.1 3176839..3177831(+) (rpoS) [Escherichia coli strain CDC#03-98]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGTGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACAGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715