Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   Spy49_0017 Genome accession   CP000829
Coordinates   33766..34521 (+) Length   251 a.a.
NCBI ID   ACI60380.1    Uniprot ID   -
Organism   Streptococcus pyogenes NZ131     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 28766..39521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Spy49_0015 - 31169..32365 (+) 1197 ACI60378.1 Putative secreted protein Streptputative secreted protein -
  Spy49_0016 prsA 32618..33580 (+) 963 ACI60379.1 Ribose-phosphate pyrophosphokinase -
  Spy49_0017 recO 33766..34521 (+) 756 ACI60380.1 DNA repair protein recO Machinery gene
  Spy49_0018 - 34624..35631 (+) 1008 ACI60381.1 Fatty acid/phospholipid synthesis protein plsX -
  Spy49_0019 acp 35624..35866 (+) 243 ACI60382.1 Acyl carrier protein -
  Spy49_0020 purC 35987..36721 (+) 735 ACI60383.1 Phosphoribosylaminoimidazole-succinocarboxamide synthase -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 29516.97 Da        Isoelectric Point: 6.9077

>NTDB_id=20220 Spy49_0017 ACI60380.1 33766..34521(+) (recO) [Streptococcus pyogenes NZ131]
MQLTESLGIVLFNRNYREDDKLVKIFTEVAGKQMFFVKHISRSKMSSIIQPLTIADFIFKLNDTGLSYVVDYSNVNTYRY
INNDIFRLAYASYVLALADAAIADNESDSHLFTFLKKTLDLMEEGLDYEILTNIFEIQILDRFGISLNFHECAICHRTDL
PLDFSHRFSAVLCSEHYYKDNRRNHLDPNVIYLLSRFQKITFDDLRTISLNKDIKKKLRQFIDELYHDYVGIKLKSKTFI
DNLVKWGDIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=20220 Spy49_0017 ACI60380.1 33766..34521(+) (recO) [Streptococcus pyogenes NZ131]
ATGCAACTAACAGAATCACTAGGCATCGTTCTTTTTAATAGGAATTATCGAGAAGATGATAAATTAGTCAAAATATTTAC
TGAAGTAGCAGGTAAGCAGATGTTTTTCGTGAAACATATTAGTCGTTCCAAAATGTCCTCAATCATTCAACCACTAACGA
TTGCTGATTTTATTTTCAAGTTAAATGATACAGGCTTGTCTTATGTTGTTGACTATAGTAACGTTAACACTTATCGGTAT
ATTAATAATGATATTTTTCGATTAGCCTATGCTAGTTATGTCTTAGCATTAGCTGATGCTGCGATTGCAGATAATGAATC
AGATTCGCATTTGTTTACGTTTTTGAAAAAAACACTTGATTTGATGGAAGAGGGCCTAGATTATGAAATTTTGACAAATA
TTTTTGAAATTCAGATATTAGATCGTTTTGGTATTAGTCTAAACTTTCATGAGTGTGCCATTTGTCATCGTACTGATTTA
CCACTTGATTTTTCCCATCGTTTTTCAGCTGTACTTTGTTCTGAACATTATTACAAAGACAACCGACGTAATCATTTAGA
TCCAAATGTTATCTACTTGTTGAGTCGATTTCAAAAAATCACATTTGATGATTTGAGAACTATTTCATTGAATAAAGACA
TCAAAAAGAAGCTTCGTCAGTTCATTGATGAGTTGTATCACGACTATGTAGGAATCAAATTAAAAAGTAAAACATTCATT
GATAATTTAGTTAAGTGGGGAGATATTATGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-73)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

60.159

100

0.602

Multiple sequence alignment