Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LC20001_RS13490 Genome accession   NZ_CP017713
Coordinates   2791738..2793549 (+) Length   603 a.a.
NCBI ID   WP_010010304.1    Uniprot ID   -
Organism   Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM 20001     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2786738..2798549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC20001_RS13465 (LC20001_13395) - 2787471..2787710 (-) 240 WP_010010301.1 protein-export chaperone SecB -
  LC20001_RS13470 (LC20001_13400) - 2787984..2789012 (-) 1029 WP_164512712.1 IS30 family transposase -
  LC20001_RS13480 (LC20001_13405) - 2789338..2790324 (-) 987 Protein_2618 DNA topoisomerase -
  LC20001_RS13485 (LC20001_13410) - 2790909..2791523 (+) 615 WP_010010303.1 LysM domain-containing protein -
  LC20001_RS13490 (LC20001_13415) pepF 2791738..2793549 (+) 1812 WP_010010304.1 oligoendopeptidase F Regulator
  LC20001_RS13495 (LC20001_13420) - 2793773..2794459 (+) 687 WP_010010305.1 phosphatase PAP2 family protein -
  LC20001_RS13500 (LC20001_13425) - 2795056..2796201 (-) 1146 WP_010010307.1 hypothetical protein -
  LC20001_RS13505 (LC20001_13430) - 2796358..2796969 (-) 612 WP_010010308.1 TMEM175 family protein -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 68788.81 Da        Isoelectric Point: 4.9881

>NTDB_id=202187 LC20001_RS13490 WP_010010304.1 2791738..2793549(+) (pepF) [Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM 20001]
MSTKTLPTREQVPTELTWDLTTVYPSDTDWENAFKEITTLGQDAAKLKGTLGDSARDLSDGLDQIFDLYRKLEKLYVYAS
LKHNQDNDNPTYQGMDQRAGALVAQVSAQVSFLEPEILAIPADELKNYIDSSTNLQVYQHYLEQVTATRKHVLSAEAEEL
LAGASDVFDASAATFNVLNDVDLPFPTVKDAQGNDVELSQGVYGTLIESTNRDVRKQAFQQLYKVYRQFRNTLASTLSSH
IKMHNYQARVHHYDSARQAALSANHIPESVYDTLVAEVEKNLPLLHRYVALRKKILEVDQLHMYDMYTPLTGEPSLSYTY
DEAKAEVLKATKVLGREYTSIVQEAFDTRWIDVVENKGKTSGAYSSGMYDTNPYILLNWQNNLNNLYTLVHEMGHSVHSH
YTHHNQPYVYGDYAIFVAEIASTTNENLLTDYLLKQQTDPRTRAYILNYYLDGFKGTIFRQTQFAEFEHFIHTEDAKGVP
LTAEHLSDYYSKLNQKYYGPAVENDPEIALEWSRIPHFYFNYYVYQYATGFAAATTLADKIINGERADRNAYIDYLKSGS
SAYPIAIMQKAGVDMTQPAYLEQAFKVFEQRLNELETLLKNLD

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=202187 LC20001_RS13490 WP_010010304.1 2791738..2793549(+) (pepF) [Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM 20001]
ATGTCAACGAAAACATTACCTACGCGTGAGCAGGTGCCCACAGAACTAACTTGGGATCTGACCACGGTTTACCCCAGTGA
TACAGATTGGGAGAACGCTTTTAAAGAAATCACAACGCTGGGGCAGGATGCCGCTAAACTTAAAGGTACCCTTGGCGATA
GCGCACGCGATCTAAGCGACGGTTTGGATCAGATTTTTGATCTTTATCGTAAACTAGAAAAATTATACGTTTATGCTAGT
TTGAAACATAACCAAGATAACGATAACCCCACTTATCAAGGTATGGATCAACGAGCTGGTGCATTAGTAGCACAAGTATC
TGCTCAGGTTTCCTTTTTAGAACCAGAAATTTTAGCGATTCCGGCTGATGAACTGAAAAATTATATTGATAGCAGCACTA
ATTTGCAGGTTTACCAACATTACTTAGAACAAGTTACGGCAACGCGTAAACATGTGCTTTCCGCTGAAGCCGAAGAATTA
TTGGCTGGTGCTAGCGATGTTTTTGATGCTTCTGCCGCAACGTTTAATGTCTTGAACGATGTTGACCTACCATTTCCAAC
CGTTAAAGATGCTCAGGGCAATGATGTTGAATTGTCACAAGGTGTTTATGGAACTTTGATCGAATCAACCAATCGTGACG
TACGTAAGCAGGCGTTCCAACAACTCTATAAAGTTTACCGCCAGTTCCGTAATACACTGGCTTCAACTTTGTCCTCACAC
ATTAAGATGCACAACTACCAAGCGCGAGTTCATCACTATGATTCTGCCCGCCAAGCCGCCCTTTCTGCCAATCATATTCC
CGAAAGCGTTTATGATACGCTAGTCGCTGAGGTCGAAAAAAATCTACCGTTACTACATCGCTATGTGGCTTTGCGCAAAA
AGATCCTTGAGGTCGATCAACTCCACATGTACGATATGTATACGCCTTTGACTGGTGAACCTAGCCTATCTTACACTTAC
GACGAAGCTAAAGCTGAAGTATTGAAGGCCACCAAAGTGCTGGGTCGTGAATACACCAGTATCGTACAAGAAGCTTTTGA
TACCCGGTGGATCGATGTCGTTGAGAATAAAGGCAAAACAAGTGGTGCCTATTCATCCGGCATGTACGACACTAATCCCT
ACATTTTATTAAACTGGCAGAATAATTTAAACAATCTGTACACGTTAGTTCATGAAATGGGGCATTCAGTCCACAGCCAT
TATACGCACCATAATCAGCCATACGTGTATGGTGACTACGCTATTTTTGTCGCCGAGATTGCTTCAACAACCAACGAAAA
TTTGTTAACTGATTACCTATTAAAGCAACAAACTGATCCACGGACGCGGGCCTACATTCTGAATTATTATTTAGATGGCT
TCAAAGGCACAATTTTCCGGCAAACCCAATTCGCTGAATTTGAGCACTTCATTCATACCGAAGATGCTAAGGGCGTACCG
TTGACTGCAGAACATTTATCTGATTACTACAGTAAATTGAACCAGAAGTATTACGGTCCAGCGGTCGAAAATGATCCCGA
GATCGCTTTGGAGTGGTCACGGATCCCTCATTTCTACTTCAATTACTACGTTTATCAGTACGCAACTGGTTTCGCGGCCG
CCACAACGCTAGCCGATAAAATCATTAATGGTGAGCGCGCTGACCGCAATGCCTACATTGATTATTTGAAGTCTGGCAGT
TCTGCTTACCCAATCGCAATCATGCAAAAGGCTGGCGTTGATATGACACAGCCAGCTTACTTGGAACAAGCATTTAAAGT
CTTTGAGCAACGTTTAAACGAATTAGAAACACTATTAAAAAATTTAGACTAG

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(206-586)

Oligopeptidase F (Peptidase_M3_N)

(116-185)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.547

98.176

0.526

Multiple sequence alignment