Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CIW80_RS16780 Genome accession   NZ_CP022686
Coordinates   3359067..3359543 (+) Length   158 a.a.
NCBI ID   WP_001186775.1    Uniprot ID   A7ZVJ5
Organism   Escherichia coli Nissle 1917     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3354067..3364543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CIW80_RS16750 (CIW80_16905) - 3354188..3357034 (+) 2847 WP_001704156.1 Ag43/Cah family autotransporter adhesin -
  CIW80_RS16755 (CIW80_16910) - 3357105..3357300 (+) 196 Protein_3108 DUF905 family protein -
  CIW80_RS16765 (CIW80_16920) - 3357418..3358236 (+) 819 WP_001234738.1 DUF932 domain-containing protein -
  CIW80_RS16775 (CIW80_16930) - 3358578..3359051 (+) 474 WP_001350782.1 antirestriction protein -
  CIW80_RS16780 (CIW80_16935) radC 3359067..3359543 (+) 477 WP_001186775.1 RadC family protein Machinery gene
  CIW80_RS16785 (CIW80_16940) - 3359606..3359827 (+) 222 WP_000692345.1 DUF987 domain-containing protein -
  CIW80_RS16790 (CIW80_16945) - 3359990..3360358 (+) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CIW80_RS16795 (CIW80_16950) - 3360448..3360825 (+) 378 WP_000854759.1 TA system toxin CbtA family protein -
  CIW80_RS16800 (CIW80_16955) - 3360822..3361310 (+) 489 WP_000761690.1 DUF5983 family protein -
  CIW80_RS16805 (CIW80_16960) - 3361327..3361503 (+) 177 WP_000839286.1 DUF957 domain-containing protein -
  CIW80_RS26060 - 3361609..3361758 (+) 150 Protein_3117 hypothetical protein -
  CIW80_RS26760 (CIW80_16965) - 3361728..3361862 (+) 135 Protein_3118 transcriptional regulator -
  CIW80_RS26650 - 3362125..3362430 (+) 306 Protein_3119 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17687.30 Da        Isoelectric Point: 7.1437

>NTDB_id=202182 CIW80_RS16780 WP_001186775.1 3359067..3359543(+) (radC) [Escherichia coli Nissle 1917]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEYGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=202182 CIW80_RS16780 WP_001186775.1 3359067..3359543(+) (radC) [Escherichia coli Nissle 1917]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZVJ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399