Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CIW80_RS13000 Genome accession   NZ_CP022686
Coordinates   2596762..2597235 (+) Length   157 a.a.
NCBI ID   WP_001292742.1    Uniprot ID   -
Organism   Escherichia coli Nissle 1917     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2591762..2602235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CIW80_RS12975 (CIW80_13080) - 2592199..2592984 (+) 786 WP_000766852.1 hypothetical protein -
  CIW80_RS12980 (CIW80_13085) - 2593186..2593404 (-) 219 WP_000070772.1 AlpA family phage regulatory protein -
  CIW80_RS12985 (CIW80_13090) - 2593522..2594136 (-) 615 WP_000772910.1 inovirus Gp2 family protein -
  CIW80_RS12990 (CIW80_13095) - 2594729..2595682 (+) 954 WP_000290406.1 hypothetical protein -
  CIW80_RS12995 (CIW80_13100) - 2595918..2596732 (+) 815 Protein_2422 DUF932 domain-containing protein -
  CIW80_RS13000 (CIW80_13105) radC 2596762..2597235 (+) 474 WP_001292742.1 DNA repair protein RadC Machinery gene
  CIW80_RS13005 (CIW80_13110) - 2597235..2597570 (+) 336 WP_000939437.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CIW80_RS13010 (CIW80_13115) - 2597601..2597939 (+) 339 Protein_2425 TA system toxin CbtA family protein -
  CIW80_RS13015 (CIW80_13120) - 2598047..2599238 (+) 1192 Protein_2426 AAA family ATPase -
  CIW80_RS13020 (CIW80_13125) - 2599223..2599444 (+) 222 WP_125112077.1 hypothetical protein -
  CIW80_RS13025 (CIW80_13130) - 2599567..2600172 (+) 606 WP_032140967.1 retron system putative HNH endonuclease -
  CIW80_RS13035 (CIW80_13140) - 2600795..2601181 (+) 387 WP_001270938.1 DUF2441 domain-containing protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17922.69 Da        Isoelectric Point: 8.6704

>NTDB_id=202159 CIW80_RS13000 WP_001292742.1 2596762..2597235(+) (radC) [Escherichia coli Nissle 1917]
MSELMLTPVFSVSEQRVIRRAMRLLEKYQRNPGESFLSSDATKTWLQLHLARQEREMFVVLYLDNQNRLLEHETLFLGTI
NSTEVHPREIVKSALRHNAAAVILAHNHPSGVAEPSRADRLITTNIVKTLDLVKVRVLDHFIIGAGDVLSFAERGWL

Nucleotide


Download         Length: 474 bp        

>NTDB_id=202159 CIW80_RS13000 WP_001292742.1 2596762..2597235(+) (radC) [Escherichia coli Nissle 1917]
ATGTCTGAACTGATGCTAACACCGGTATTTTCGGTGAGTGAACAACGCGTTATCCGCCGTGCGATGCGTCTGCTGGAGAA
ATATCAACGCAATCCTGGCGAATCTTTTCTTTCCTCTGACGCCACAAAAACCTGGCTGCAACTGCATCTGGCACGACAGG
AGCGGGAAATGTTTGTTGTGCTTTACCTCGATAACCAGAACCGACTGCTGGAACACGAAACGCTATTTCTCGGCACGATT
AACAGTACAGAAGTACATCCCCGTGAGATTGTGAAATCTGCGCTACGGCACAATGCCGCAGCAGTAATCCTTGCGCATAA
CCATCCCTCCGGCGTGGCGGAACCCAGTCGGGCCGACAGACTTATTACAACGAATATTGTTAAGACACTGGATTTGGTGA
AAGTGAGGGTGCTGGATCATTTCATTATTGGGGCGGGGGATGTCCTCTCTTTTGCCGAACGGGGCTGGCTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.085

75.159

0.414