Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   BKX93_RS07390 Genome accession   NZ_CP017707
Coordinates   1619681..1621081 (+) Length   466 a.a.
NCBI ID   WP_046166265.1    Uniprot ID   A0A1D9LEZ8
Organism   Chromobacterium vaccinii strain 21-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1614681..1626081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKX93_RS07365 (BKX93_07365) - 1616291..1617268 (+) 978 WP_046155706.1 KpsF/GutQ family sugar-phosphate isomerase -
  BKX93_RS07370 (BKX93_07370) - 1617315..1617839 (+) 525 WP_046155705.1 HAD-IIIA family hydrolase -
  BKX93_RS07375 (BKX93_07375) lptC 1617836..1618405 (+) 570 WP_046155704.1 LPS export ABC transporter periplasmic protein LptC -
  BKX93_RS07380 (BKX93_07380) lptA 1618395..1618952 (+) 558 WP_046166267.1 lipopolysaccharide transport periplasmic protein LptA -
  BKX93_RS07385 (BKX93_07385) lptB 1618949..1619677 (+) 729 WP_046155702.1 LPS export ABC transporter ATP-binding protein -
  BKX93_RS07390 (BKX93_07390) rpoN/rpoN1 1619681..1621081 (+) 1401 WP_046166265.1 RNA polymerase factor sigma-54 Machinery gene
  BKX93_RS07395 (BKX93_07395) raiA 1621149..1621481 (+) 333 WP_070979384.1 ribosome-associated translation inhibitor RaiA -
  BKX93_RS07400 (BKX93_07400) ptsN 1621606..1622067 (+) 462 WP_046155699.1 PTS IIA-like nitrogen regulatory protein PtsN -
  BKX93_RS07405 (BKX93_07405) hprK 1622060..1623016 (+) 957 WP_021476575.1 HPr(Ser) kinase/phosphatase -
  BKX93_RS07410 (BKX93_07410) rapZ 1622997..1623839 (+) 843 WP_046155698.1 RNase adapter RapZ -
  BKX93_RS07415 (BKX93_07415) - 1623894..1624499 (+) 606 WP_046166264.1 flavin prenyltransferase UbiX -
  BKX93_RS07420 (BKX93_07420) - 1624502..1625971 (+) 1470 WP_070979386.1 NAD(P)H-hydrate dehydratase -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 51726.92 Da        Isoelectric Point: 4.9777

>NTDB_id=202133 BKX93_RS07390 WP_046166265.1 1619681..1621081(+) (rpoN/rpoN1) [Chromobacterium vaccinii strain 21-1]
MKQALQLKVSQQLTLTPQLQQSIKLLQLSTLDLQTEVERFLLDNPLLERGDEPRDGEAAPDSAEQQESPAEAQDADSRDD
GAGELLDWGAGSRKGDDNDFDPMLNVPCPVSLREHLLTQLGEIALSDRDRAVMRLLIEELDDDGYLPLQLDELAGNLPLE
LELEVDELAVGLRLLQQFDPAGVGARSLAESLTLQLQRLPGVEPEHALALAIVREHLALLGGRDYARLKKLLRCDDAALR
GAQALIARLNPHPATGFGHGETHYVIPDISVRKLRGRWAAELNRAAMPRLRVNRLYERMLADQRAGGEMSGRLQEARWLV
KNIQQRFDTILKVAEAIVERQQSFFEHGEVAMRPLILRDIAEELGLHESTVSRSTSQKYLLCSRGLFELKYFFGSSLETE
SGGECSATAIKAHIRGMIDAEDRAKPLSDSAIADALAKQGIQVARRTVAKYREAMQIPAVNLRKAL

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=202133 BKX93_RS07390 WP_046166265.1 1619681..1621081(+) (rpoN/rpoN1) [Chromobacterium vaccinii strain 21-1]
ATGAAACAGGCCCTTCAGCTCAAGGTATCCCAGCAACTGACGCTGACGCCGCAGCTGCAGCAATCGATCAAGCTGCTGCA
ACTGTCCACACTGGACCTGCAGACGGAGGTGGAGCGCTTCCTGCTGGACAATCCGCTGCTGGAGCGCGGCGACGAGCCCC
GCGACGGCGAAGCCGCTCCCGACAGCGCGGAACAGCAGGAAAGCCCGGCCGAGGCCCAGGACGCCGACAGCCGCGACGAC
GGCGCCGGCGAACTGCTGGACTGGGGCGCCGGCAGCCGCAAGGGGGACGACAATGACTTCGACCCCATGCTCAACGTGCC
CTGCCCGGTCAGTCTGCGCGAGCACCTGCTGACGCAACTGGGCGAAATCGCCCTCTCCGACCGCGACCGCGCGGTGATGC
GCCTGCTGATAGAGGAACTGGACGACGACGGCTACCTGCCGCTGCAGCTGGACGAGCTGGCCGGCAACCTGCCGCTGGAA
CTGGAGCTGGAAGTCGACGAGCTGGCGGTGGGCCTCAGGCTGCTGCAGCAGTTCGACCCCGCCGGCGTGGGCGCGCGCTC
GCTGGCCGAATCGCTGACGCTGCAGTTGCAGCGCCTGCCCGGCGTCGAGCCTGAGCACGCGCTGGCGCTGGCCATCGTCC
GCGAGCACCTGGCCCTGCTCGGCGGCCGCGACTACGCCCGGCTGAAAAAGCTGCTGCGCTGCGACGACGCGGCGCTGCGC
GGCGCGCAGGCGCTGATCGCCCGCCTCAACCCGCACCCGGCCACCGGCTTCGGCCACGGCGAAACCCATTACGTGATTCC
CGACATCAGCGTGCGCAAGCTGCGCGGCCGCTGGGCGGCCGAGCTCAACCGCGCGGCGATGCCCCGCCTGCGCGTCAACC
GGCTGTACGAGCGCATGCTGGCCGACCAGCGCGCCGGCGGCGAAATGTCGGGCCGGCTGCAGGAGGCGCGCTGGCTGGTC
AAGAACATCCAGCAACGGTTTGACACCATACTCAAAGTGGCGGAAGCTATCGTTGAGCGCCAGCAATCGTTCTTTGAGCA
CGGCGAAGTGGCGATGCGCCCGCTGATCCTGCGGGACATCGCGGAAGAACTGGGCCTGCACGAATCCACCGTTTCCCGAT
CCACCAGCCAGAAATACCTGCTTTGTTCGCGGGGCTTGTTCGAGCTCAAGTATTTCTTCGGCAGTTCGCTGGAAACTGAA
AGCGGCGGAGAGTGCTCCGCCACCGCGATCAAGGCCCACATCCGCGGCATGATAGACGCCGAGGACCGCGCGAAGCCGCT
GTCCGACAGCGCCATCGCCGACGCGCTGGCCAAGCAGGGAATACAGGTTGCCAGACGCACCGTAGCCAAGTATCGTGAAG
CCATGCAGATTCCGGCGGTGAATCTGCGCAAGGCGCTGTAG

Domains

Predicted by InterProScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(311-464)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(110-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

52.191

100

0.562

Multiple sequence alignment