Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CGP84_RS11400 Genome accession   NZ_CP022682
Coordinates   2205515..2205985 (+) Length   156 a.a.
NCBI ID   WP_047213680.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 78     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2200515..2210985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGP84_RS11380 (CGP84_02083) coaW 2200825..2201628 (+) 804 WP_000862728.1 type II pantothenate kinase -
  CGP84_RS11385 (CGP84_02084) - 2201758..2202429 (-) 672 WP_000120549.1 DUF2750 domain-containing protein -
  CGP84_RS11390 (CGP84_02085) - 2202828..2204021 (-) 1194 WP_000183713.1 hypothetical protein -
  CGP84_RS11395 (CGP84_02086) - 2204021..2205205 (-) 1185 WP_086098803.1 M20 family metallopeptidase -
  CGP84_RS11400 (CGP84_02087) luxS 2205515..2205985 (+) 471 WP_047213680.1 S-ribosylhomocysteine lyase Regulator
  CGP84_RS11405 (CGP84_02088) - 2206138..2206488 (-) 351 WP_001024034.1 membrane protein -
  CGP84_RS11410 (CGP84_02089) - 2206502..2207803 (-) 1302 WP_001242306.1 pyrimidine-nucleoside phosphorylase -
  CGP84_RS11420 (CGP84_02090) deoC 2208083..2208745 (-) 663 WP_001083326.1 deoxyribose-phosphate aldolase -
  CGP84_RS11425 (CGP84_02091) deoD 2209059..2209769 (+) 711 WP_000160304.1 purine-nucleoside phosphorylase -
  CGP84_RS11430 (CGP84_02092) - 2209890..2210333 (-) 444 WP_000070865.1 Dps family protein -
  CGP84_RS11435 (CGP84_02093) - 2210533..2210946 (-) 414 WP_001123308.1 thiol-disulfide oxidoreductase DCC family protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17541.81 Da        Isoelectric Point: 5.4567

>NTDB_id=202108 CGP84_RS11400 WP_047213680.1 2205515..2205985(+) (luxS) [Staphylococcus aureus strain 78]
MTKMNVESFNLDHTKVVAPFIRLAGTMEGLNGDVIHKYDIRFKQPNKEHMDMPGLHSLEHLMAENIRNHSDKVVDLSPMG
CQTGFYVSFINHDNYDDVLNIVEATLNDVLNATEVPACNEVQCGWAASHSLEGAKTIAQVFLDKRNEWHDVFGTGK

Nucleotide


Download         Length: 471 bp        

>NTDB_id=202108 CGP84_RS11400 WP_047213680.1 2205515..2205985(+) (luxS) [Staphylococcus aureus strain 78]
ATGACAAAAATGAATGTTGAAAGTTTCAATTTAGATCATACTAAAGTGGTTGCCCCATTTATTAGATTAGCGGGAACGAT
GGAAGGATTAAACGGAGATGTCATTCACAAATATGACATTCGTTTCAAACAACCAAACAAAGAACATATGGATATGCCCG
GATTGCATTCATTAGAACATTTAATGGCTGAAAATATTAGAAATCATAGTGACAAAGTCGTTGATTTAAGTCCTATGGGT
TGCCAAACTGGTTTCTATGTATCATTTATTAATCATGATAATTATGATGATGTATTAAATATTGTTGAAGCAACTTTAAA
TGATGTGCTAAATGCTACTGAAGTGCCTGCTTGTAATGAAGTACAATGTGGCTGGGCAGCAAGTCATTCATTAGAAGGTG
CTAAAACTATCGCTCAAGTATTTCTAGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(5-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

44.681

90.385

0.404