Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BrL25_RS19145 Genome accession   NZ_CP017705
Coordinates   4009871..4011595 (+) Length   574 a.a.
NCBI ID   WP_018672594.1    Uniprot ID   -
Organism   Brevibacillus laterosporus DSM 25     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4004871..4016595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BrL25_RS19120 (BrL25_18805) dxs 4005097..4006968 (+) 1872 WP_205828413.1 1-deoxy-D-xylulose-5-phosphate synthase -
  BrL25_RS19125 (BrL25_18810) - 4006977..4007804 (+) 828 WP_018672591.1 TlyA family RNA methyltransferase -
  BrL25_RS19130 (BrL25_18815) - 4007993..4008295 (+) 303 WP_018672592.1 hypothetical protein -
  BrL25_RS19135 (BrL25_18820) - 4008547..4009404 (+) 858 WP_018672593.1 NAD(+)/NADH kinase -
  BrL25_RS19140 (BrL25_18825) ahrC 4009409..4009858 (+) 450 WP_003337877.1 transcriptional regulator AhrC/ArgR -
  BrL25_RS19145 (BrL25_18830) recN 4009871..4011595 (+) 1725 WP_018672594.1 DNA repair protein RecN Machinery gene
  BrL25_RS19150 (BrL25_18835) spoIVB 4011705..4013030 (+) 1326 WP_018672595.1 SpoIVB peptidase -
  BrL25_RS19155 (BrL25_18840) spo0A 4013319..4014101 (+) 783 WP_018672596.1 sporulation transcription factor Spo0A -
  BrL25_RS19160 (BrL25_18845) - 4014505..4015059 (+) 555 WP_018672597.1 hypothetical protein -
  BrL25_RS25795 - 4015453..4015677 (+) 225 WP_335639112.1 helix-turn-helix domain-containing protein -
  BrL25_RS19170 (BrL25_18855) - 4015947..4016141 (+) 195 WP_018672599.1 hypothetical protein -

Sequence

Protein


Download         Length: 574 a.a.        Molecular weight: 64967.15 Da        Isoelectric Point: 5.1482

>NTDB_id=202106 BrL25_RS19145 WP_018672594.1 4009871..4011595(+) (recN) [Brevibacillus laterosporus DSM 25]
MIHELTIRNFAIIKHTTISFCQGLNILTGETGAGKSIIIDALGQLLGDRSSAELIRYGEKRAEIEGLFECKPSHPAYSVC
ESFGIQVDPDGILVVRRDISSTGKSIIRVNGQLITLAMLRELGPWLVNVHGQHDHQALMQSDKHIRWLDAYGEPRLVGTK
QEFGHLYQKYRKAVQDLSRMAKNERELMQRIDLLSYQLNEIEAAKLTPGEDDKLMQQRKKWANIEKIFAGVQDAYMSLYG
DQRGQDWLGHAMGELERVQQYDEQLVPIVETIQSAYYQVEDTVQQLRHIKDRLDFDPAILAEVEGRLDQLSGLKRKYGKS
VDEILEYAAGIQDELDEIQHYDDRLQQMEKTLREAEADVAVEALELSTLRRELAIELADLIEHELKELHMERARFAIEIK
HMPDERGIEVEGNRVRVNSRGIDEIEFLIAPNPGEPLRPLTKIASGGELSRVMLAIKSILATTEQVGTLIFDEVDTGVSG
RAAQAIAEKLARVAKHRQVLCITHLPQVASMADAHFYIQKQMDEQETSTTVILMSPEERVNELARMLGGAEVTEKTKEHA
KEMILLGNERKAVN

Nucleotide


Download         Length: 1725 bp        

>NTDB_id=202106 BrL25_RS19145 WP_018672594.1 4009871..4011595(+) (recN) [Brevibacillus laterosporus DSM 25]
ATGATCCACGAACTAACCATACGCAATTTTGCGATTATCAAACACACCACAATCTCTTTTTGTCAAGGGCTTAATATCCT
GACAGGGGAGACGGGGGCAGGTAAATCCATTATTATTGATGCGCTTGGGCAATTGCTCGGTGATCGAAGTTCAGCAGAGC
TTATCCGTTATGGAGAAAAACGGGCAGAGATAGAAGGACTTTTCGAATGTAAGCCTAGCCATCCTGCTTATTCGGTCTGT
GAGAGCTTTGGAATTCAGGTCGATCCTGACGGTATTCTGGTTGTACGTCGCGATATTTCCTCCACTGGGAAAAGTATCAT
TCGTGTTAACGGTCAGCTAATTACCTTAGCAATGTTACGAGAGTTAGGTCCATGGCTGGTAAACGTACATGGTCAGCATG
ATCATCAGGCGCTTATGCAATCAGACAAGCATATTCGCTGGCTTGATGCTTACGGGGAGCCCCGCTTGGTCGGGACAAAA
CAGGAATTTGGTCATTTATATCAAAAGTACCGCAAAGCAGTGCAAGATTTGTCACGAATGGCTAAAAATGAACGAGAATT
GATGCAACGCATTGATTTATTAAGCTATCAGCTAAATGAAATTGAAGCTGCAAAATTGACCCCAGGCGAAGATGATAAGC
TCATGCAACAACGCAAGAAGTGGGCTAATATTGAAAAAATATTTGCTGGTGTACAGGATGCTTACATGTCCCTATATGGA
GACCAGAGGGGACAAGATTGGCTTGGGCATGCCATGGGAGAATTGGAACGGGTGCAACAATATGATGAACAGCTTGTCCC
GATCGTAGAAACAATTCAAAGTGCGTATTATCAGGTAGAAGATACTGTCCAACAATTGCGTCATATAAAAGATCGTCTTG
ATTTTGATCCAGCTATATTGGCAGAAGTAGAAGGCAGATTAGATCAGCTATCCGGATTAAAGCGAAAGTATGGTAAATCT
GTGGATGAAATCCTGGAATATGCAGCAGGTATCCAGGACGAATTAGATGAAATCCAACATTATGATGATCGCTTGCAACA
AATGGAGAAGACACTCCGTGAAGCCGAAGCTGACGTAGCGGTTGAGGCTTTGGAGTTAAGTACGCTTCGCCGTGAGTTAG
CGATAGAACTAGCTGACTTAATTGAACATGAGCTAAAAGAATTGCACATGGAGCGAGCCCGCTTTGCGATTGAGATTAAG
CATATGCCAGACGAGCGTGGTATTGAGGTGGAAGGAAATCGAGTCAGAGTGAATTCCCGTGGGATTGACGAGATAGAATT
TTTGATTGCGCCGAACCCGGGTGAACCACTACGCCCTTTAACCAAGATTGCTTCTGGAGGGGAATTATCTCGTGTCATGT
TGGCAATTAAAAGTATTCTAGCTACTACCGAGCAAGTAGGTACTTTGATCTTCGACGAGGTGGATACTGGTGTAAGTGGT
CGAGCAGCTCAAGCTATTGCTGAAAAATTGGCACGAGTAGCGAAACATCGTCAAGTTTTATGTATTACACATTTACCGCA
AGTAGCTTCTATGGCGGATGCCCATTTTTATATTCAAAAGCAGATGGATGAACAGGAGACCAGCACGACGGTTATCCTTA
TGTCACCAGAAGAGCGTGTTAACGAGCTTGCTCGTATGCTTGGTGGGGCTGAAGTAACAGAGAAAACAAAAGAACATGCT
AAGGAAATGATTCTCCTTGGAAACGAGCGGAAAGCTGTCAATTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.677

98.78

0.481

Multiple sequence alignment