Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   CGP84_RS08960 Genome accession   NZ_CP022682
Coordinates   1788496..1789770 (+) Length   424 a.a.
NCBI ID   WP_001279341.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 78     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1783496..1794770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGP84_RS08940 - 1784820..1784915 (+) 96 WP_031761395.1 hypothetical protein -
  CGP84_RS08945 (CGP84_01646) - 1784876..1786006 (-) 1131 WP_115288410.1 HAD family hydrolase -
  CGP84_RS08950 (CGP84_01647) nagE 1786113..1787579 (-) 1467 WP_000276354.1 N-acetylglucosamine-specific PTS transporter subunit IIBC -
  CGP84_RS08955 (CGP84_01648) - 1787707..1788324 (-) 618 WP_000287588.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  CGP84_RS08960 (CGP84_01649) htrA 1788496..1789770 (+) 1275 WP_001279341.1 trypsin-like peptidase domain-containing protein Regulator
  CGP84_RS08965 (CGP84_01650) tyrS 1789864..1791126 (-) 1263 WP_000186029.1 tyrosine--tRNA ligase -
  CGP84_RS08970 (CGP84_01651) - 1791507..1792412 (+) 906 WP_000184373.1 transglycosylase domain-containing protein -
  CGP84_RS08975 - 1792392..1792484 (-) 93 WP_031927668.1 hypothetical protein -

Sequence


Protein


Download         Length: 424 a.a.        Molecular weight: 45733.87 Da        Isoelectric Point: 9.8964

>NTDB_id=202095 CGP84_RS08960 WP_001279341.1 1788496..1789770(+) (htrA) [Staphylococcus aureus strain 78]
MSDFNHTDHSTTNHSQTPRYRRPKFPWFKTVIVALIAGIIGALLVLGIGKVLNSTILNKDGSTVQTTNNKGGNQLDGQSK
KFGTVHEMIKSVSPTIVGVINMQKASSVDDLLKGKSSKPSEAGVGSGVIYQINNNSAYIVTNNHVIDGANEIRVQLHNKK
QVKAKLVGKDAVTDIAVLKIENTKGIKAIQFANSSKVQTGDSVFAMGNPLGLQFANSVTSGIISASERTIDAETTGGNTK
VSVLQTDAAINPGNSGGALVDINGNLVGINSMKIAATQVEGIGFAIPSNEVKVTIEQLVKHGKIDRPSIGIGLINLKDIP
EEEREQLHTDSEDGIYVAKADSDIDLKKGDIITEIDGKKIKDDVDLRSYLYENKKPGESVTVTVIRDGKTKEVKVKLKQQ
KEQPKRQSRSERQSPGQGDRDFFR

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=202095 CGP84_RS08960 WP_001279341.1 1788496..1789770(+) (htrA) [Staphylococcus aureus strain 78]
ATGTCAGATTTTAATCATACAGATCATTCTACAACAAACCATAGCCAAACACCTAGATACAGAAGACCTAAATTTCCATG
GTTTAAAACAGTCATCGTTGCATTGATTGCTGGAATCATTGGTGCACTTCTAGTACTTGGTATAGGCAAAGTATTAAATA
GTACAATTTTAAATAAAGATGGTTCAACTGTCCAGACAACAAATAATAAAGGTGGCAATCAATTAGACGGTCAAAGCAAG
AAATTCGGTACCGTTCATGAAATGATAAAATCTGTCTCCCCTACAATTGTTGGAGTTATTAACATGCAAAAAGCATCAAG
TGTAGACGACTTATTAAAAGGCAAATCATCTAAACCATCTGAAGCCGGAGTAGGTTCAGGTGTCATCTATCAAATAAACA
ACAATTCAGCTTATATCGTTACAAACAATCATGTTATTGATGGCGCAAATGAAATTAGAGTCCAATTACATAATAAAAAA
CAAGTTAAAGCGAAATTAGTTGGTAAGGATGCAGTAACTGATATTGCTGTACTTAAAATTGAAAATACTAAAGGTATTAA
AGCGATTCAATTCGCCAACTCTTCAAAAGTACAAACTGGTGATAGCGTATTCGCAATGGGTAACCCATTAGGATTACAAT
TTGCTAACTCTGTAACATCAGGTATCATTTCAGCAAGTGAACGTACTATTGACGCTGAGACAACTGGTGGCAATACAAAA
GTCAGCGTTCTTCAAACAGATGCTGCTATTAACCCAGGTAACTCAGGTGGCGCATTAGTAGATATTAATGGTAATTTAGT
TGGTATTAACTCAATGAAAATTGCTGCGACACAAGTTGAAGGTATCGGGTTTGCCATTCCAAGTAATGAAGTTAAAGTAA
CAATTGAACAACTTGTAAAACATGGTAAAATTGACCGCCCTTCGATTGGTATTGGTTTAATTAATTTGAAAGATATTCCT
GAAGAAGAGCGCGAGCAACTTCATACTGATAGCGAAGACGGTATTTATGTCGCAAAAGCTGATAGTGATATTGATCTTAA
AAAAGGTGATATTATTACAGAAATTGATGGCAAGAAAATTAAAGATGATGTTGATTTAAGAAGCTATTTGTATGAAAATA
AAAAGCCTGGTGAATCAGTCACTGTTACCGTTATCCGTGATGGTAAAACTAAAGAAGTTAAAGTGAAATTAAAACAACAA
AAAGAACAACCAAAACGTCAAAGCCGATCAGAGCGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

38.806

94.811

0.368