Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   CGP84_RS07885 Genome accession   NZ_CP022682
Coordinates   1583964..1585643 (-) Length   559 a.a.
NCBI ID   WP_031765180.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 78     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1578964..1590643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGP84_RS07865 (CGP84_01448) - 1579114..1580388 (-) 1275 WP_047213483.1 dihydrolipoamide acetyltransferase family protein -
  CGP84_RS07870 (CGP84_01449) - 1580401..1581384 (-) 984 WP_047213485.1 alpha-ketoacid dehydrogenase subunit beta -
  CGP84_RS07875 (CGP84_01450) - 1581384..1582376 (-) 993 WP_047213487.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  CGP84_RS07880 (CGP84_01451) lpdA 1582392..1583813 (-) 1422 WP_115288400.1 dihydrolipoyl dehydrogenase -
  CGP84_RS07885 (CGP84_01452) recN 1583964..1585643 (-) 1680 WP_031765180.1 DNA repair protein RecN Machinery gene
  CGP84_RS07890 (CGP84_01453) argR 1585659..1586111 (-) 453 WP_001124985.1 transcriptional regulator ArgR -
  CGP84_RS07895 (CGP84_01454) - 1586542..1587423 (-) 882 WP_000183374.1 polyprenyl synthetase family protein -
  CGP84_RS07900 (CGP84_01455) - 1587401..1587631 (-) 231 WP_000159865.1 exodeoxyribonuclease VII small subunit -
  CGP84_RS07905 (CGP84_01456) xseA 1587624..1588961 (-) 1338 WP_047213491.1 exodeoxyribonuclease VII large subunit -
  CGP84_RS07910 (CGP84_01457) nusB 1588978..1589367 (-) 390 WP_000087385.1 transcription antitermination factor NusB -
  CGP84_RS07915 (CGP84_01458) - 1589427..1589789 (-) 363 WP_000241588.1 Asp23/Gls24 family envelope stress response protein -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 64264.90 Da        Isoelectric Point: 4.7920

>NTDB_id=202076 CGP84_RS07885 WP_031765180.1 1583964..1585643(-) (recN) [Staphylococcus aureus strain 78]
MLQTLSIKQFAIIEELEIQFSDGLTVLSGETGSGKSIIIDAIGQLIGMRASSDFVRHGEKKAVIEGIFDIDESKDAIHIL
KNMDIDVDEDFLLVKREIFSSGKSLCKINNQTVTLQDLRKVMQELLDIHGQHETQSLLKQKYHLTLLDNYAESRYQDLLD
KYHQTFQNYKAKKQELKDLESADQALLQRLDLMKFQLEELSEAHLKEGEIEQLEIDIKRIQNSEKLSLALNNAHMTLTDE
NAITDRLYELSNHLLTINDIVPNKYDKLKEDIDQFYYILEDAKHELYDEMANTEFDEQVLNEYESRMNLLNNLKRKYGKD
ISELIAYQEKLNNEINKIENYEQSTSQLREEINALYNQVIEVGQALSKQRRIVARELRDHIVSEIQNLQMKDANLEISFK
KLEEPNIDGIEFVEFLISPNKGEPLKSLNKIASGGELSRIMLALKSIFVKSRGQTAILFDEVDSGVSGQAAQKMAEKMRD
IAEYIQVICISHLPQVASMSDHHLLISKSSKDDRTTTQVQELIGDDKVDEIARMISGASVTDLTRENAREMIQHNQRRR

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=202076 CGP84_RS07885 WP_031765180.1 1583964..1585643(-) (recN) [Staphylococcus aureus strain 78]
ATGTTACAAACCTTATCAATCAAGCAATTTGCTATTATTGAAGAGTTAGAAATTCAATTTTCTGATGGTTTAACTGTTTT
AAGTGGTGAAACGGGTTCAGGTAAGTCAATTATTATAGATGCAATTGGACAATTAATTGGAATGAGAGCTTCATCTGATT
TTGTAAGACATGGTGAAAAAAAGGCTGTCATCGAAGGTATATTTGATATTGACGAGAGTAAAGATGCTATACATATATTG
AAAAATATGGATATTGATGTAGATGAAGATTTTTTATTAGTTAAACGGGAAATTTTCAGCTCTGGTAAAAGTCTTTGTAA
AATTAATAATCAAACAGTTACTTTACAAGATTTACGAAAAGTTATGCAAGAATTATTAGATATTCATGGCCAACATGAAA
CGCAATCTTTGTTGAAACAAAAATACCATTTAACATTATTGGATAATTACGCAGAATCACGTTATCAAGATTTGTTGGAT
AAATATCACCAAACTTTTCAAAATTATAAAGCCAAAAAGCAAGAGTTAAAAGATTTAGAATCAGCAGACCAAGCATTGCT
GCAGCGTTTAGATTTAATGAAATTTCAATTAGAAGAATTGTCTGAAGCACATCTAAAAGAAGGCGAAATAGAGCAACTTG
AAATAGATATTAAACGTATTCAAAACTCTGAAAAATTAAGTTTAGCGCTTAATAACGCACATATGACATTAACGGATGAA
AATGCTATCACTGATCGTTTGTATGAACTAAGCAACCATTTGTTAACAATAAACGATATAGTTCCAAACAAATATGACAA
ATTAAAAGAAGATATTGATCAATTTTATTACATTTTAGAAGATGCAAAACATGAGTTATATGATGAAATGGCTAATACAG
AATTCGACGAACAAGTGTTAAACGAGTATGAATCTCGTATGAATTTGCTGAATAATTTAAAACGCAAATATGGAAAAGAT
ATTTCAGAATTAATCGCATATCAAGAAAAGCTTAATAATGAAATCAATAAAATTGAAAACTATGAACAAAGTACATCGCA
GTTACGAGAAGAAATAAATGCATTGTATAATCAAGTTATAGAGGTTGGACAAGCGTTATCTAAGCAGCGTCGTATAGTTG
CTAGGGAGTTAAGAGACCACATTGTATCGGAAATTCAAAACTTACAAATGAAAGATGCAAATCTTGAGATTTCATTTAAA
AAATTAGAAGAACCGAATATTGATGGAATCGAATTTGTAGAATTTTTAATCAGTCCTAATAAAGGGGAACCATTAAAAAG
TTTAAATAAAATTGCGTCAGGTGGAGAACTTTCTAGAATTATGTTAGCGTTAAAAAGTATTTTTGTTAAATCGAGAGGTC
AAACTGCAATTTTATTCGATGAGGTTGACTCAGGTGTATCTGGACAAGCCGCACAAAAAATGGCAGAGAAAATGCGAGAT
ATAGCAGAATATATACAAGTTATTTGTATATCTCACTTGCCACAAGTTGCATCGATGAGCGACCATCATTTATTAATTTC
GAAATCATCAAAAGATGATCGTACAACAACACAAGTTCAAGAGTTAATTGGCGATGATAAAGTAGATGAAATTGCACGAA
TGATTTCAGGTGCAAGTGTTACTGATTTAACTCGTGAAAATGCAAGAGAAATGATACAACACAATCAAAGACGTAGATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.409

100

0.442