Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BS1321_RS21905 Genome accession   NZ_CP017704
Coordinates   4528475..4530190 (+) Length   571 a.a.
NCBI ID   WP_063233097.1    Uniprot ID   A0A223ELZ9
Organism   Peribacillus simplex NBRC 15720 = DSM 1321     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4523475..4535190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS1321_RS21880 (BS1321_21540) - 4523570..4523803 (+) 234 WP_034308286.1 exodeoxyribonuclease VII small subunit -
  BS1321_RS21885 (BS1321_21545) - 4523805..4524698 (+) 894 WP_063233095.1 polyprenyl synthetase family protein -
  BS1321_RS21890 (BS1321_21550) dxs 4524948..4526840 (+) 1893 WP_063233180.1 1-deoxy-D-xylulose-5-phosphate synthase -
  BS1321_RS21895 (BS1321_21555) - 4526845..4527672 (+) 828 WP_063233096.1 TlyA family RNA methyltransferase -
  BS1321_RS21900 (BS1321_21560) ahrC 4528003..4528452 (+) 450 WP_034308279.1 transcriptional regulator AhrC/ArgR -
  BS1321_RS21905 (BS1321_21565) recN 4528475..4530190 (+) 1716 WP_063233097.1 DNA repair protein RecN Machinery gene
  BS1321_RS21910 (BS1321_21570) spoIVB 4530352..4531644 (+) 1293 WP_063233098.1 SpoIVB peptidase -
  BS1321_RS21915 (BS1321_21575) spo0A 4531974..4532765 (+) 792 WP_063233099.1 sporulation transcription factor Spo0A -
  BS1321_RS21920 (BS1321_21580) - 4533120..4533857 (+) 738 WP_157732821.1 flagellar assembly protein A -
  BS1321_RS21925 (BS1321_21585) - 4533998..4534732 (+) 735 WP_063233101.1 glycerophosphodiester phosphodiesterase -
  BS1321_RS21930 (BS1321_21590) - 4534776..4535012 (-) 237 WP_063233102.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 571 a.a.        Molecular weight: 64492.38 Da        Isoelectric Point: 5.2172

>NTDB_id=202072 BS1321_RS21905 WP_063233097.1 4528475..4530190(+) (recN) [Peribacillus simplex NBRC 15720 = DSM 1321]
MLTELSIRNFAIIDSLSVSFEKGLTVLTGETGAGKSIIIDAVHLLVGGRGSAEFIRHGESKAEIEGLFQIEDEKHPVFAK
AEEFGLDMNDGMAILRRDISQSGKSVCRVNGKLVTISTLREIGRTLIDIHGQHEHQELMDERLHLPLLDQFGGEKIASAL
TEYQKLYKRYETASKQLNGLSQNEQQMVHRLDLIQFQFDEIQKADLKLREDEELMEERKKINNFEKIHEALQTSYNALNG
EQHAIDWLSVAMNNLEEAAGLDEGLKNSSETVSNSYFLLEEAVSNIRDQLDSLDYDTERVEFIESRLNEINQLKRKYGRT
IEEILEYGAAIEEEVEKLQNRETHIAKLEKEMKSIKADLIVEAKNLSELRQKFAQQLTKKIHQELKDLYMEKTIFEPHFL
QTAYTFDEMSDRGINQSGLDSMEFYISTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGITSIIFDEVDTGVSGRVA
QSIAEKIYKVATGSQVLCISHLPQVAAMADTHLFIAKNVRAGRTNTSVKPLIETEKVKEIGRMISGVEITDLTKQHANEL
IQLAKRLKITS

Nucleotide


Download         Length: 1716 bp        

>NTDB_id=202072 BS1321_RS21905 WP_063233097.1 4528475..4530190(+) (recN) [Peribacillus simplex NBRC 15720 = DSM 1321]
TTGTTAACAGAACTATCGATTAGGAATTTTGCGATCATAGACAGCCTGTCCGTTTCATTTGAGAAAGGCTTAACGGTCTT
GACAGGGGAAACAGGGGCAGGGAAGTCAATCATAATAGATGCCGTTCATCTTTTGGTTGGGGGGCGTGGTTCTGCAGAGT
TCATTCGGCATGGTGAGTCTAAGGCCGAAATAGAAGGATTATTCCAAATTGAAGATGAAAAACACCCGGTCTTTGCCAAA
GCGGAAGAGTTTGGCCTGGATATGAATGATGGGATGGCGATACTTCGAAGGGACATCTCACAGAGCGGCAAAAGCGTTTG
CAGGGTAAATGGAAAACTTGTAACGATTTCCACTTTACGAGAGATAGGACGGACATTGATAGATATCCATGGACAGCATG
AACATCAGGAATTAATGGATGAACGACTCCATCTTCCGCTACTCGATCAATTCGGCGGTGAAAAAATCGCATCTGCACTC
ACTGAATACCAAAAGCTATATAAACGTTATGAAACCGCTTCTAAACAATTGAATGGTTTGAGTCAAAATGAACAGCAAAT
GGTCCACCGCCTTGATTTGATCCAATTTCAATTCGATGAAATCCAAAAAGCTGATTTGAAATTACGCGAAGATGAAGAAT
TGATGGAAGAGCGGAAGAAAATTAATAATTTCGAAAAAATCCATGAAGCGCTGCAAACCAGTTATAATGCTTTAAATGGT
GAGCAGCATGCAATTGATTGGCTTTCAGTAGCCATGAATAATTTGGAGGAAGCGGCAGGGCTTGATGAAGGTTTAAAGAA
CAGCTCTGAAACCGTTTCAAATAGCTACTTCCTGCTTGAAGAGGCCGTGTCAAACATCCGAGACCAATTAGACTCTTTGG
ATTATGATACTGAACGTGTGGAATTCATTGAAAGTCGCCTTAATGAAATAAATCAATTAAAGCGTAAATACGGGAGGACC
ATCGAGGAAATCCTGGAATATGGAGCCGCTATAGAAGAAGAAGTCGAAAAACTGCAAAATAGGGAAACCCATATAGCGAA
GCTTGAAAAGGAAATGAAATCCATCAAGGCAGATTTAATTGTCGAAGCAAAGAATCTTTCTGAACTTCGCCAGAAATTCG
CTCAGCAGTTAACCAAAAAGATCCATCAGGAATTAAAAGATTTATACATGGAAAAGACAATTTTCGAACCACATTTCCTT
CAAACGGCCTATACTTTCGATGAAATGTCAGATAGGGGCATTAATCAGTCAGGGCTGGATTCAATGGAATTTTATATTTC
CACCAATCCAGGCGAACCGTTAAAACCTCTTTCTAAAATCGCATCTGGCGGAGAGCTGTCGAGGATCATGCTGGCTTTGA
AAAGTATTTTCTCCAAGCACCAAGGCATAACGTCCATTATATTTGATGAAGTGGACACAGGTGTGAGCGGGCGGGTTGCA
CAATCCATTGCCGAAAAGATCTATAAAGTGGCAACTGGATCACAAGTACTATGCATATCCCATTTGCCACAGGTGGCAGC
TATGGCGGATACTCATCTTTTCATAGCGAAAAATGTAAGGGCCGGACGCACGAATACCTCGGTCAAGCCGCTAATTGAAA
CTGAAAAAGTAAAAGAAATTGGCAGGATGATTTCAGGAGTAGAGATAACGGATTTGACGAAGCAGCATGCCAATGAATTA
ATCCAGCTGGCCAAAAGGCTGAAGATTACATCTTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A223ELZ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.938

100

0.615

Multiple sequence alignment