Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BS1321_RS11760 Genome accession   NZ_CP017704
Coordinates   2468601..2469989 (-) Length   462 a.a.
NCBI ID   WP_063235779.1    Uniprot ID   A0A223EGZ1
Organism   Peribacillus simplex NBRC 15720 = DSM 1321     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2463601..2474989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS1321_RS11740 (BS1321_11545) ispF 2464999..2465478 (-) 480 WP_063235783.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  BS1321_RS11745 (BS1321_11550) ispD 2465493..2466179 (-) 687 WP_063235782.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  BS1321_RS11750 (BS1321_11555) - 2466201..2467298 (-) 1098 WP_063235781.1 PIN/TRAM domain-containing protein -
  BS1321_RS11755 (BS1321_11560) disA 2467525..2468598 (-) 1074 WP_063235780.1 DNA integrity scanning diadenylate cyclase DisA -
  BS1321_RS11760 (BS1321_11565) radA 2468601..2469989 (-) 1389 WP_063235779.1 DNA repair protein RadA Machinery gene
  BS1321_RS11765 (BS1321_11570) clpC 2470187..2472628 (-) 2442 WP_063235778.1 ATP-dependent protease ATP-binding subunit ClpC -
  BS1321_RS11770 (BS1321_11575) - 2472759..2473835 (-) 1077 WP_063235777.1 protein arginine kinase -
  BS1321_RS11775 (BS1321_11580) - 2473832..2474383 (-) 552 WP_063235776.1 UvrB/UvrC motif-containing protein -
  BS1321_RS11780 (BS1321_11585) - 2474405..2474866 (-) 462 WP_048677843.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 50216.86 Da        Isoelectric Point: 8.2388

>NTDB_id=202036 BS1321_RS11760 WP_063235779.1 2468601..2469989(-) (radA) [Peribacillus simplex NBRC 15720 = DSM 1321]
MAVKKKTKFMCQSCGYESAKWMGKCPGCGEWNKMVEETEIVKPARKGAFTHSEVRGSGEREKAAPITTIQSEKEPRIKTD
LMELNRALGGGIVQGSLVLIGGDPGIGKSTLLLQVSSQLAHKQKKVLYISGEESVKQTKLRADRLGTMSENLFVYAETDM
DYIQQAITDVKPDLVIIDSIQTVYHSEVTSAPGSVSQVRECTASLMRIAKTNGIAIFIVGHVTKEGAIAGPRLLEHMVDT
VLYFEGERHHTYRIIRAVKNRFGSTNEMGIFEMKEHGLEEVANPSEIFLEERSQGASGSTVVASMEGTRPVLVEIQALIS
PTSFGNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAISIASSFRDKPTNPTDCIIGE
VGLTGEVRRVSRIEQRVQEAAKLGFERVIIPANNIGGWTAPKGIKIVGVSSVSEALKQTLGG

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=202036 BS1321_RS11760 WP_063235779.1 2468601..2469989(-) (radA) [Peribacillus simplex NBRC 15720 = DSM 1321]
ATGGCTGTAAAGAAGAAAACGAAATTTATGTGTCAGTCTTGTGGTTATGAGTCCGCGAAATGGATGGGGAAATGTCCAGG
ATGCGGTGAATGGAACAAAATGGTCGAGGAAACCGAAATCGTTAAACCAGCTAGAAAAGGCGCTTTTACCCATTCAGAGG
TTAGAGGTTCCGGGGAACGGGAGAAGGCAGCACCCATAACGACTATTCAATCAGAAAAAGAACCACGGATTAAGACGGAT
TTAATGGAATTGAATCGTGCTCTTGGGGGCGGGATCGTACAGGGATCCCTTGTATTGATTGGTGGGGACCCGGGTATCGG
TAAGTCCACCCTGCTTTTACAGGTATCATCCCAATTGGCGCATAAACAGAAAAAAGTGCTTTATATATCAGGTGAAGAAT
CAGTCAAGCAGACCAAATTGAGAGCGGACCGGCTTGGGACCATGTCGGAAAATCTATTCGTTTATGCTGAAACCGATATG
GACTACATCCAACAGGCAATTACAGATGTAAAACCGGATTTGGTCATTATTGACTCCATTCAAACGGTATACCATTCAGA
GGTTACATCTGCCCCAGGAAGCGTTTCACAAGTGAGGGAATGCACAGCCTCACTCATGCGCATTGCTAAAACGAACGGGA
TCGCGATTTTTATCGTCGGACACGTTACAAAGGAAGGGGCCATTGCGGGGCCACGGCTGCTTGAGCACATGGTTGACACC
GTATTATATTTTGAAGGAGAAAGACACCATACATATCGAATTATACGTGCGGTCAAAAATCGCTTTGGTTCGACGAATGA
GATGGGTATTTTTGAGATGAAAGAACATGGATTGGAAGAGGTCGCGAATCCATCGGAAATTTTCCTTGAAGAACGGTCGC
AAGGAGCTTCGGGCTCCACAGTCGTCGCATCCATGGAGGGCACAAGGCCAGTGCTTGTAGAAATTCAAGCATTGATTTCA
CCTACGAGTTTTGGCAATCCAAGACGAATGGCCACGGGAATTGACCACAATCGAGTTTCGCTTTTAATGGCTGTTCTGGA
AAAGAGAGTTGGATTGCTGCTCCAAAACCAAGATGCGTATTTAAAGGTTGCTGGTGGCGTCAAGCTGGATGAACCGGCAA
TTGACCTCGCTGTTGCAATAAGCATTGCATCAAGCTTCCGTGATAAACCAACAAACCCTACCGATTGCATCATTGGTGAA
GTGGGGCTGACTGGGGAAGTAAGAAGGGTTTCACGAATTGAACAAAGGGTGCAGGAAGCAGCGAAGTTAGGGTTTGAGCG
GGTTATAATACCGGCTAATAATATAGGAGGATGGACCGCGCCGAAAGGTATTAAGATCGTTGGTGTTTCATCGGTTTCGG
AGGCTCTTAAACAAACGTTAGGGGGTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-226)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(369-434)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A223EGZ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

76.739

99.567

0.764
  radA Streptococcus mitis NCTC 12261

61.707

98.918

0.61
  radA Streptococcus mitis SK321

61.488

98.918

0.608
  radA Streptococcus pneumoniae TIGR4

61.269

98.918

0.606
  radA Streptococcus pneumoniae D39

61.269

98.918

0.606
  radA Streptococcus pneumoniae Rx1

61.269

98.918

0.606
  radA Streptococcus pneumoniae R6

61.269

98.918

0.606

Multiple sequence alignment