Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   CGP84_RS01935 Genome accession   NZ_CP022682
Coordinates   394878..395723 (+) Length   281 a.a.
NCBI ID   WP_001621659.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 78     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 389878..400723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGP84_RS01915 (CGP84_00362) - 390144..391985 (-) 1842 WP_000077330.1 bifunctional homocysteine S-methyltransferase/methylenetetrahydrofolate reductase -
  CGP84_RS01920 (CGP84_00363) metC 391954..393114 (-) 1161 WP_000175850.1 cystathionine beta-lyase MetC -
  CGP84_RS01925 (CGP84_00364) - 393111..394214 (-) 1104 WP_000655692.1 PLP-dependent transferase -
  CGP84_RS01935 (CGP84_00365) spo0J 394878..395723 (+) 846 WP_001621659.1 ParB/RepB/Spo0J family partition protein Regulator
  CGP84_RS01940 (CGP84_00366) - 395877..396758 (+) 882 WP_000373075.1 mechanosensitive ion channel family protein -
  CGP84_RS01945 (CGP84_00367) - 396788..396991 (+) 204 WP_000157348.1 DUF951 domain-containing protein -
  CGP84_RS01950 (CGP84_00368) ychF 397003..398100 (+) 1098 WP_106669514.1 redox-regulated ATPase YchF -
  CGP84_RS01955 (CGP84_00369) - 398186..398377 (-) 192 WP_001052483.1 hypothetical protein -
  CGP84_RS01965 (CGP84_00370) rpsF 398621..398917 (+) 297 WP_001261460.1 30S ribosomal protein S6 -
  CGP84_RS01970 (CGP84_00371) ssbA 398938..399441 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  CGP84_RS01975 (CGP84_00372) rpsR 399493..399735 (+) 243 WP_000897044.1 30S ribosomal protein S18 -

Sequence

Protein


Download         Length: 281 a.a.        Molecular weight: 32797.82 Da        Isoelectric Point: 10.0000

>NTDB_id=202032 CGP84_RS01935 WP_001621659.1 394878..395723(+) (spo0J) [Staphylococcus aureus strain 78]
MSELSKSEDQRITKTKDEQIKQIDISDIKPNPYQPRKTFDENHLNDLADSIKQYGILQPIVLRKTVQGYYIVVGERRFRA
SKIAGLKYVSAIIKDLTDEDMMELAVIENLQREDLNAIEEAESYQRLMTDLKITQQEVAKRLSKSRPYIANMLRLLHLPK
KIADMVKDGRLTSAHGRTLLAIKDEQQMLRLAKRVVKEKWSVRYLENHVNELKNVSSKSETDKVDITKPKFIKQQERQLR
EQYGAKVDISIKKSVGKISFEFESQDDFVRIIEQLNRKYGK

Nucleotide


Download         Length: 846 bp        

>NTDB_id=202032 CGP84_RS01935 WP_001621659.1 394878..395723(+) (spo0J) [Staphylococcus aureus strain 78]
GTGAGTGAATTGTCAAAAAGTGAAGATCAACGTATTACTAAAACAAAAGATGAACAAATTAAGCAAATAGATATATCGGA
TATCAAACCGAATCCGTATCAGCCCCGAAAAACTTTCGATGAAAATCATTTAAATGATTTGGCAGATTCAATTAAGCAAT
ATGGTATTTTGCAACCAATTGTGCTTAGAAAAACAGTACAAGGCTATTACATTGTAGTTGGTGAAAGAAGGTTTAGAGCT
TCGAAAATTGCTGGTCTAAAATACGTATCAGCGATTATCAAAGATTTAACAGATGAAGATATGATGGAACTGGCGGTCAT
CGAAAATTTACAAAGAGAAGACTTAAATGCGATTGAAGAAGCTGAAAGTTATCAACGTTTGATGACAGATTTGAAAATTA
CACAACAAGAAGTAGCGAAGCGATTGAGTAAGTCGCGCCCGTATATAGCGAATATGTTGAGGTTATTACATTTACCGAAA
AAGATTGCTGACATGGTAAAAGATGGGCGACTGACAAGTGCACATGGACGAACGTTATTGGCAATTAAAGATGAACAACA
AATGCTTAGGTTAGCGAAACGGGTTGTTAAAGAAAAGTGGAGTGTCAGATATTTAGAAAATCATGTTAATGAATTAAAAA
ATGTTTCGTCAAAGTCGGAAACAGACAAAGTAGATATAACTAAGCCTAAATTTATAAAGCAACAAGAACGACAGCTTCGA
GAACAGTATGGCGCAAAAGTAGATATATCGATAAAAAAATCAGTCGGCAAAATCTCATTTGAGTTTGAATCACAAGATGA
CTTTGTGAGAATCATTGAACAATTAAATCGTAAGTATGGTAAATAG

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(22-109)

HTH domain found in ParB protein (HTH_ParB)

(161-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

40.996

92.883

0.381