Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AP3564_RS18260 Genome accession   NZ_CP017703
Coordinates   3687189..3688913 (-) Length   574 a.a.
NCBI ID   WP_063388133.1    Uniprot ID   -
Organism   Aeribacillus pallidus strain KCTC3564     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3682189..3693913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AP3564_RS18240 (AP3564_17790) lpdA 3682705..3684126 (-) 1422 WP_063388137.1 dihydrolipoyl dehydrogenase -
  AP3564_RS18245 (AP3564_17795) - 3684338..3684586 (+) 249 WP_063388136.1 DUF2627 domain-containing protein -
  AP3564_RS18250 (AP3564_17800) spo0A 3684607..3685401 (-) 795 WP_063388135.1 sporulation transcription factor Spo0A -
  AP3564_RS18255 (AP3564_17805) spoIVB 3685784..3687073 (-) 1290 WP_063388134.1 SpoIVB peptidase -
  AP3564_RS18260 (AP3564_17810) recN 3687189..3688913 (-) 1725 WP_063388133.1 DNA repair protein RecN Machinery gene
  AP3564_RS18265 (AP3564_17815) ahrC 3688935..3689384 (-) 450 WP_063388132.1 transcriptional regulator AhrC/ArgR -
  AP3564_RS18270 (AP3564_17820) - 3689452..3690285 (-) 834 WP_094246185.1 TlyA family RNA methyltransferase -
  AP3564_RS18275 (AP3564_17825) dxs 3690278..3692179 (-) 1902 WP_063388130.1 1-deoxy-D-xylulose-5-phosphate synthase -
  AP3564_RS18280 (AP3564_17830) - 3692190..3692810 (-) 621 WP_094246530.1 hypothetical protein -

Sequence

Protein


Download         Length: 574 a.a.        Molecular weight: 64899.47 Da        Isoelectric Point: 5.7729

>NTDB_id=202014 AP3564_RS18260 WP_063388133.1 3687189..3688913(-) (recN) [Aeribacillus pallidus strain KCTC3564]
MLAELSIKNFAIIESLSLSFEKGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRAGEKRAELEGLFILEEEDHPCLKK
CHELGIDASEGMIVLNRNISANGKSICRINGKLVTIGILRDIGSTLVDIHGQHDHQELMDEQKHLHLLDEYGGEEVKKAK
DAYVKLYKKYADLTKRLKALSENEQQMAHRLDLLKFQLKEIDDADLKMDEDIKLQEERQEMLNFEKIYEALKNSYESLQG
EQRGLDFLRLAMNHLEEAAEFNKQLKEMSETLSNSFYVVEDLTFQLRNELERMEFNPDRLNMIEDRLHVIHRLKRKYGQT
IKDILQYRDEIEKEIDTIENRDSHIQTLRNELKSVVEELLTKSQHLTAIRKKYANKLTAQITSELKQLYMDKTTFKVQFS
QKEAQDSALIDGIPAKFGSDGMDFVEFYISTNPGEPLKPLAKIASGGELSRIMLALKTIFSKHQGITSIIFDEVDTGVSG
RVAQAIGEKIYQVSINSQVLCITHLPQVAAMADNHLLIAKEVSKEGRTKTKVIPLSEKEKIAEIGRMIAGAEVTELSKQH
AKELLDLAISVKSS

Nucleotide


Download         Length: 1725 bp        

>NTDB_id=202014 AP3564_RS18260 WP_063388133.1 3687189..3688913(-) (recN) [Aeribacillus pallidus strain KCTC3564]
ATGTTAGCGGAATTGTCGATTAAAAATTTTGCCATTATTGAATCCCTATCTCTTTCTTTTGAAAAAGGGCTGACAGTGCT
GACGGGAGAAACAGGTGCTGGGAAATCGATCATTATTGATGCTATATCTCTTCTTGTAGGAGGACGCGGTTCTTCTGAAT
TTGTCCGAGCCGGTGAAAAGCGCGCTGAATTGGAAGGGTTGTTTATATTGGAAGAAGAGGACCATCCGTGCTTGAAAAAG
TGCCATGAATTAGGAATAGATGCTAGTGAAGGCATGATTGTTTTAAACCGGAATATCTCCGCTAACGGAAAAAGCATTTG
CAGAATTAATGGAAAGCTTGTCACAATCGGAATTCTCCGGGATATTGGGAGCACATTAGTCGATATACACGGACAGCACG
ATCATCAAGAGCTGATGGACGAGCAAAAGCATCTTCATCTTCTCGACGAATATGGCGGCGAAGAAGTGAAAAAAGCAAAG
GATGCATACGTAAAGCTTTATAAAAAATACGCGGACTTAACAAAGCGGTTAAAAGCCCTTTCAGAAAATGAGCAGCAGAT
GGCGCATCGATTGGATTTATTGAAGTTTCAATTAAAGGAAATTGACGATGCCGATTTAAAAATGGATGAAGATATAAAGC
TTCAGGAAGAACGGCAGGAAATGTTAAATTTTGAAAAAATTTATGAAGCCTTGAAAAATAGCTATGAATCGCTGCAGGGA
GAGCAGCGTGGGCTTGATTTTTTACGACTTGCCATGAATCATTTAGAAGAAGCAGCAGAATTTAATAAACAGTTAAAAGA
AATGTCCGAAACGCTGTCGAACAGTTTTTACGTTGTAGAGGATTTAACGTTTCAGCTTAGAAATGAATTAGAACGCATGG
AATTTAATCCTGATCGGTTAAATATGATAGAGGACCGCCTCCATGTCATTCATCGGTTAAAACGAAAGTACGGGCAAACA
ATCAAAGACATTTTGCAATATAGAGATGAAATTGAAAAAGAGATCGATACGATTGAAAACCGTGATAGCCATATTCAAAC
GCTTAGAAATGAGCTTAAATCTGTCGTCGAAGAACTGCTGACAAAATCCCAACATTTAACGGCAATAAGAAAAAAATATG
CAAACAAGCTAACTGCTCAAATCACATCTGAATTAAAACAGCTGTACATGGATAAAACTACATTTAAGGTTCAATTTTCG
CAGAAAGAGGCCCAAGATTCCGCTTTGATCGATGGAATTCCAGCGAAATTTGGAAGTGACGGCATGGATTTTGTGGAATT
TTACATTTCCACCAATCCAGGCGAACCTCTTAAGCCTCTTGCGAAAATTGCTTCCGGCGGGGAATTATCAAGAATCATGC
TTGCCTTAAAAACGATTTTTTCCAAGCATCAAGGAATTACTTCCATCATATTTGACGAGGTGGATACTGGTGTAAGCGGC
CGTGTCGCCCAAGCGATCGGAGAAAAAATTTATCAGGTGTCGATTAACTCTCAAGTGCTATGCATCACGCATCTTCCTCA
AGTTGCAGCGATGGCTGACAACCATCTATTAATTGCTAAGGAAGTAAGCAAAGAGGGAAGAACGAAAACAAAGGTTATTC
CGCTTTCTGAAAAAGAAAAAATTGCAGAAATCGGCCGGATGATTGCTGGAGCAGAAGTGACGGAATTGTCGAAGCAGCAT
GCAAAAGAGCTGTTGGATCTGGCTATATCGGTGAAATCCTCCTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

62.392

100

0.627

Multiple sequence alignment