Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   FORC64_RS21960 Genome accession   NZ_CP022664
Coordinates   4175870..4176346 (-) Length   158 a.a.
NCBI ID   WP_032198294.1    Uniprot ID   -
Organism   Escherichia coli strain FORC 064     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4170870..4181346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC64_RS21905 (FORC64_4230) nanS 4171051..4172031 (+) 981 WP_000991415.1 sialate O-acetylesterase -
  FORC64_RS21910 (FORC64_4231) - 4172039..4172689 (-) 651 WP_001037966.1 HNH endonuclease -
  FORC64_RS27850 - 4172826..4172969 (+) 144 Protein_4046 restriction endonuclease -
  FORC64_RS28145 - 4173633..4173761 (-) 129 Protein_4047 transcriptional regulator -
  FORC64_RS27425 (FORC64_4234) - 4173737..4173886 (-) 150 Protein_4048 hypothetical protein -
  FORC64_RS21935 (FORC64_4235) - 4173971..4174168 (-) 198 WP_024192776.1 DUF957 domain-containing protein -
  FORC64_RS21940 (FORC64_4236) - 4174180..4174671 (-) 492 WP_001598218.1 DUF5983 family protein -
  FORC64_RS21945 (FORC64_4237) - 4174668..4175042 (-) 375 WP_001598217.1 TA system toxin CbtA family protein -
  FORC64_RS21950 - 4175132..4175500 (-) 369 WP_001598216.1 type IV toxin-antitoxin system YeeU family antitoxin -
  FORC64_RS21955 (FORC64_4239) - 4175580..4175801 (-) 222 WP_000692303.1 DUF987 domain-containing protein -
  FORC64_RS21960 (FORC64_4240) radC 4175870..4176346 (-) 477 WP_032198294.1 RadC family protein Machinery gene
  FORC64_RS21965 (FORC64_4241) - 4176362..4176847 (-) 486 WP_000206667.1 antirestriction protein -
  FORC64_RS21970 (FORC64_4242) - 4176939..4177757 (-) 819 WP_001598214.1 DUF932 domain-containing protein -
  FORC64_RS21980 (FORC64_4243) - 4178096..4180942 (-) 2847 WP_063854818.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17572.19 Da        Isoelectric Point: 6.9788

>NTDB_id=202010 FORC64_RS21960 WP_032198294.1 4175870..4176346(-) (radC) [Escherichia coli strain FORC 064]
MQQLSFLPGAMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADCLITERLIQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=202010 FORC64_RS21960 WP_032198294.1 4175870..4176346(-) (radC) [Escherichia coli strain FORC 064]
ATGCAACAGCTTTCCTTTCTGCCCGGAGCGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGTCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCAGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCGGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACTGCCTTATCACGGAACGTCTGATACAGGCACTGGGCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAACCAGGTTTTCTCCTTTGCCGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment