Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AP3564_RS10355 Genome accession   NZ_CP017703
Coordinates   2092441..2094258 (+) Length   605 a.a.
NCBI ID   WP_094245346.1    Uniprot ID   A0A223E5Z2
Organism   Aeribacillus pallidus strain KCTC3564     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2087441..2099258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AP3564_RS10335 (AP3564_10135) - 2087675..2088331 (-) 657 WP_063387001.1 TerC family protein -
  AP3564_RS10340 (AP3564_10140) mecA 2088600..2089262 (+) 663 WP_063387000.1 adaptor protein MecA -
  AP3564_RS10345 (AP3564_10145) cls 2089381..2090892 (+) 1512 WP_063386999.1 cardiolipin synthase -
  AP3564_RS10350 (AP3564_10150) - 2091163..2092356 (+) 1194 WP_094245345.1 competence protein CoiA -
  AP3564_RS10355 (AP3564_10155) pepF 2092441..2094258 (+) 1818 WP_094245346.1 oligoendopeptidase F Regulator
  AP3564_RS10360 - 2094429..2094602 (-) 174 WP_157727921.1 hypothetical protein -
  AP3564_RS10370 (AP3564_10160) - 2095613..2096497 (-) 885 WP_063387492.1 ClpXP adapter SpxH family protein -
  AP3564_RS10375 (AP3564_10165) - 2096487..2096897 (-) 411 WP_063387493.1 hypothetical protein -
  AP3564_RS10380 (AP3564_10170) - 2097195..2097797 (-) 603 WP_094245347.1 lytic transglycosylase domain-containing protein -
  AP3564_RS10385 (AP3564_10175) - 2097797..2098387 (-) 591 WP_094245348.1 CYTH domain-containing protein -
  AP3564_RS10390 (AP3564_10180) - 2098500..2098868 (+) 369 WP_094245349.1 hypothetical protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 70024.66 Da        Isoelectric Point: 4.8284

>NTDB_id=202004 AP3564_RS10355 WP_094245346.1 2092441..2094258(+) (pepF) [Aeribacillus pallidus strain KCTC3564]
MGNETAVKRLPKREEIPVEYTWRLEDIFASDDEWEKEFEEVKQLIPKIGEYRGKLGQSSDLLYEALSYQDSVMERLGKLY
TYAHMRYDQDTTNSFYQGLNDRAANLYTQASSLSSYIVPEILSIEEEKLQQFLKENDQLNLYAHALDEINRQRPHVLDAE
QEAILAQAAEALSTASNTFGKLNNADLEFPAIKDENGEEVEITHGRYIQFLESENRRVRRDAFQALYATYGKFKNTFAST
LSGAVKKNNFYAKVRKYENARQAALSANNIPEEVYDNLVKTINEHLPLLHRYVDLRKKALKLDELHMYDLYTPLVQNVDM
KITYEEAKDIVLKGLAPLGEEYVGILQEGFENRWIDVKENKGKRSGAYSSGAYGTNPYILLNWQDNVNNLFTLVHELGHS
VHSYYTRKTQPYPYGDYSIFVAEVASTCNENLLNEYLLNTIDDEKKRLYLLNHFLEGFRGTVFRQTMFAEFEHYIHLKAQ
NGEPLTPEFLTQTYYELNKKYFGDNIVVDEEIGLEWARIPHFYYNFYVYQYATGFSAASALSKQILSEGETAVERYINFL
KAGSSDYPINVLKKAGVDMTSTKPIEDACKVFEEKLTEMEELLLK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=202004 AP3564_RS10355 WP_094245346.1 2092441..2094258(+) (pepF) [Aeribacillus pallidus strain KCTC3564]
ATGGGCAATGAAACAGCTGTCAAAAGGCTGCCAAAACGGGAAGAAATCCCTGTTGAGTATACTTGGCGGCTAGAAGATAT
TTTTGCTTCTGATGATGAATGGGAAAAAGAATTTGAAGAAGTAAAGCAGCTAATTCCAAAAATCGGTGAATATAGAGGAA
AATTAGGTCAATCCTCCGATCTGTTATATGAGGCGCTCTCTTATCAAGATTCCGTGATGGAGAGGCTTGGAAAGCTTTAT
ACATATGCCCATATGCGCTACGATCAAGATACAACTAATTCTTTTTATCAAGGATTGAATGACCGGGCAGCAAATCTTTA
TACACAAGCTTCCAGCCTCTCATCCTATATCGTTCCGGAAATACTATCCATTGAAGAAGAAAAGCTTCAGCAATTTTTGA
AAGAAAATGATCAATTGAATCTTTATGCACATGCCTTGGACGAAATCAACCGGCAAAGACCGCACGTGCTCGATGCGGAG
CAAGAGGCCATTTTAGCTCAAGCTGCGGAAGCCCTGAGCACTGCCTCCAATACGTTTGGAAAATTAAATAATGCGGACTT
GGAATTTCCAGCAATTAAGGATGAAAATGGAGAAGAAGTGGAAATCACTCACGGCCGTTATATCCAGTTTTTGGAGAGTG
AAAATAGACGAGTCCGTCGCGATGCGTTCCAAGCATTATACGCAACATATGGAAAATTTAAAAATACGTTTGCCAGCACA
TTAAGCGGAGCTGTTAAGAAAAATAATTTTTATGCGAAGGTGCGGAAATATGAGAATGCCCGCCAGGCTGCACTAAGCGC
CAACAACATTCCGGAGGAAGTCTACGACAATTTAGTGAAAACGATCAATGAACATTTGCCGCTGCTCCATCGTTATGTCG
ATTTGCGGAAAAAAGCGCTGAAGCTTGATGAACTTCATATGTATGATCTTTATACGCCGCTTGTACAAAACGTCGATATG
AAAATCACGTATGAAGAAGCGAAAGACATCGTATTGAAGGGGCTTGCTCCATTAGGTGAAGAATATGTCGGCATTTTACA
AGAAGGCTTTGAAAACAGATGGATTGACGTTAAGGAGAATAAAGGGAAACGAAGCGGAGCTTACTCCTCTGGCGCCTATG
GAACAAATCCATATATTTTGCTGAATTGGCAAGATAATGTGAACAATTTATTCACACTTGTTCACGAGCTTGGCCATTCG
GTGCACAGCTACTATACAAGAAAAACACAGCCGTATCCGTACGGAGATTATTCTATTTTTGTCGCGGAAGTGGCTTCTAC
ATGCAATGAAAACTTGTTAAATGAATATTTGCTCAACACGATCGATGATGAAAAGAAACGTTTATACTTGCTGAATCATT
TCCTTGAAGGGTTTAGAGGAACGGTATTCCGGCAAACGATGTTTGCTGAGTTTGAACATTATATCCATTTGAAGGCGCAA
AACGGAGAGCCGCTCACACCGGAATTTTTGACGCAAACGTATTATGAGTTAAACAAAAAATATTTTGGTGACAACATTGT
GGTCGATGAAGAAATTGGCTTAGAATGGGCAAGAATTCCGCATTTTTATTACAATTTTTACGTTTATCAATACGCAACAG
GCTTTAGTGCTGCAAGCGCCTTGAGCAAGCAGATTTTATCGGAAGGAGAAACTGCCGTTGAAAGGTACATTAATTTCTTG
AAAGCGGGAAGCTCTGATTATCCGATTAATGTGCTGAAAAAAGCAGGGGTCGATATGACATCAACCAAGCCGATTGAAGA
TGCATGCAAAGTATTTGAAGAAAAGCTGACGGAGATGGAGGAGCTGCTGTTAAAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(210-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A223E5Z2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.265

98.017

0.502

Multiple sequence alignment