Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   FORC64_RS10025 Genome accession   NZ_CP022664
Coordinates   1934317..1935744 (-) Length   475 a.a.
NCBI ID   WP_000980539.1    Uniprot ID   -
Organism   Escherichia coli strain FORC 064     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1929317..1940744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC64_RS09995 (FORC64_1946) yeeZ 1929372..1930196 (+) 825 WP_000754749.1 SDR family oxidoreductase -
  FORC64_RS10000 (FORC64_1947) yeeY 1930242..1931171 (+) 930 WP_000803341.1 LysR substrate-binding domain-containing protein -
  FORC64_RS10005 yoeI 1931386..1931448 (+) 63 WP_010723108.1 membrane protein YoeI -
  FORC64_RS10010 (FORC64_1948) plaP 1931438..1932796 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  FORC64_RS10015 (FORC64_1949) tsuA 1932975..1934033 (+) 1059 WP_000492323.1 thiosulfate utilization transporter TsuA/YeeE -
  FORC64_RS10020 (FORC64_1950) tsuB 1934047..1934274 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  FORC64_RS10025 (FORC64_1951) sbcB 1934317..1935744 (-) 1428 WP_000980539.1 exodeoxyribonuclease I Machinery gene
  FORC64_RS10030 (FORC64_1953) dacD 1935953..1937119 (+) 1167 WP_096962480.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  FORC64_RS10035 (FORC64_1954) sbmC 1937237..1937710 (+) 474 WP_001105385.1 DNA gyrase inhibitor SbmC -
  FORC64_RS10040 (FORC64_1955) yeeA 1937909..1938967 (+) 1059 WP_001200892.1 FUSC family protein -
  FORC64_RS10045 (FORC64_1957) tmaR 1939139..1939468 (+) 330 WP_000450409.1 DUF496 family protein -
  FORC64_RS27730 - 1939569..1939934 (-) 366 WP_001282181.1 EutP/PduV family microcompartment system protein -
  FORC64_RS27735 - 1940205..1940594 (-) 390 WP_089079246.1 transposase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54498.80 Da        Isoelectric Point: 5.3498

>NTDB_id=201982 FORC64_RS10025 WP_000980539.1 1934317..1935744(-) (sbcB) [Escherichia coli strain FORC 064]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=201982 FORC64_RS10025 WP_000980539.1 1934317..1935744(-) (sbcB) [Escherichia coli strain FORC 064]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGAGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAATTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTAATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACAAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTAGCGATATTCGTGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGACATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581