Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   AP3564_RS01405 Genome accession   NZ_CP017703
Coordinates   305939..306892 (+) Length   317 a.a.
NCBI ID   WP_063386800.1    Uniprot ID   -
Organism   Aeribacillus pallidus strain KCTC3564     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 300939..311892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AP3564_RS01390 (AP3564_01335) - 302088..303950 (+) 1863 Protein_276 ABC transporter ATP-binding protein -
  AP3564_RS01395 (AP3564_01340) - 303990..304844 (+) 855 WP_094244443.1 Cof-type HAD-IIB family hydrolase -
  AP3564_RS01400 (AP3564_01345) - 305058..305534 (-) 477 WP_094244444.1 N-acetyltransferase -
  AP3564_RS01405 (AP3564_01350) ceuB 305939..306892 (+) 954 WP_063386800.1 ABC transporter permease Machinery gene
  AP3564_RS01410 (AP3564_01355) - 306882..307832 (+) 951 WP_066249998.1 iron chelate uptake ABC transporter family permease subunit -
  AP3564_RS01415 (AP3564_01360) - 307826..308584 (+) 759 WP_094244445.1 ABC transporter ATP-binding protein -
  AP3564_RS01420 (AP3564_01365) - 308750..309706 (+) 957 WP_094244446.1 siderophore ABC transporter substrate-binding protein -
  AP3564_RS01425 (AP3564_01370) - 310193..311263 (-) 1071 WP_094244447.1 hypothetical protein -
  AP3564_RS01430 (AP3564_01375) - 311267..311794 (-) 528 WP_157727855.1 YiiX/YebB-like N1pC/P60 family cysteine hydrolase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34892.98 Da        Isoelectric Point: 9.8243

>NTDB_id=201978 AP3564_RS01405 WP_063386800.1 305939..306892(+) (ceuB) [Aeribacillus pallidus strain KCTC3564]
MKKRYLIIALIILSIASIFIGVNDIKPTDIFNLTDEQIQILIISRIPRVISIIIAGTSISIAGLIMQQLSRNKFVSPTTA
GTMDSARLGILVAIMVFADASPIQKMIVAFAFALLGTFIFMKILEKIKYKDTIFVPLVGLMFGNIIGSITTFFAYKNNLI
QNVSSWLEGDFSLILKGQYELLYVSIPFVLIAYLYANQFTVAGMGEEFSKNLGLNYKQVVNIGLVIVALITSSVVLTVGT
IPFLGLVVPNIVAIYNGDHLKKNLIHTALLGAVFVMFCDILGRIIIYPYEISISLTVGVIGSAIFVYLLMRRKAYGL

Nucleotide


Download         Length: 954 bp        

>NTDB_id=201978 AP3564_RS01405 WP_063386800.1 305939..306892(+) (ceuB) [Aeribacillus pallidus strain KCTC3564]
ATGAAAAAACGATATTTGATCATTGCTCTCATTATCCTTTCAATTGCATCGATTTTTATCGGAGTAAACGATATTAAACC
AACTGATATATTCAATTTGACAGATGAACAAATACAAATTTTGATCATCAGCAGAATTCCGCGCGTCATTAGCATTATTA
TTGCAGGAACGAGTATAAGCATTGCCGGTCTTATTATGCAGCAGCTGAGCAGAAACAAGTTCGTTTCCCCAACTACGGCA
GGAACGATGGATTCCGCCAGATTGGGGATTTTAGTTGCGATCATGGTTTTTGCAGACGCTAGTCCGATTCAAAAAATGAT
TGTCGCTTTTGCTTTTGCACTTTTAGGAACATTTATCTTTATGAAAATATTAGAAAAAATTAAATATAAAGATACTATTT
TTGTTCCTCTAGTCGGGCTGATGTTCGGCAATATCATTGGATCTATCACTACTTTTTTTGCATACAAAAATAATTTGATT
CAAAATGTTTCCTCATGGCTGGAAGGAGATTTTTCGTTAATTTTAAAAGGTCAATATGAATTATTGTACGTCAGCATTCC
TTTTGTATTAATTGCATACTTGTATGCGAATCAATTCACTGTCGCTGGAATGGGAGAGGAATTTTCGAAAAATTTAGGCT
TGAATTATAAACAAGTTGTCAATATCGGACTTGTTATCGTAGCTTTGATCACTTCATCTGTTGTATTGACGGTTGGAACC
ATTCCGTTTCTAGGTCTTGTCGTTCCGAATATTGTCGCCATATACAATGGAGACCATTTGAAAAAGAATTTGATTCATAC
CGCTTTGCTCGGTGCTGTTTTCGTTATGTTCTGCGATATTTTAGGGCGAATCATTATATATCCGTACGAAATCTCGATCA
GCTTAACCGTCGGTGTCATCGGCAGTGCCATTTTTGTTTACTTACTTATGAGGAGAAAAGCATATGGGTTATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.313

98.738

0.536

Multiple sequence alignment